RNA id: LOC117596929


Basic Information

Item Value
RNA id LOC117596929
length 428
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596929
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32661892 ~ 32665420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCTAAAGTTggagatgaaggtgatgaagttactctgtcctgcagctACAAAGGCTTCAGTGGTAGCATATACAATgtgcagtggtacagacaatatccaaaatctaaacccgAGTTTGTTCTCTATATTACTCCAAGTGGAGATCTGAGTTCCAGCAGACCtccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcggcccacagtgacaggaaatccaactgcactgtacaaaaactttaacacagttttgttataGTGAAAGCAGTTCCGCTGATGATTTAGAGA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88464 lncRNA downstream 1931 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 9651 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 13794 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 33896 32627561 ~ 32627996 (-) True G74640
XR_004577913.1 lncRNA downstream 459038 32202081 ~ 32202854 (-) True LOC117596963
XR_004577920.1 lncRNA upstream 105121 32767588 ~ 32769282 (-) True LOC117596968
XR_004577919.1 lncRNA upstream 187460 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 199740 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 209279 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 283667 32946134 ~ 32947158 (-) True LOC117597171
XM_026935889.2 mRNA downstream 934340 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1117258 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1128634 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1192251 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 161091 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 310318 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 468620 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 468620 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 468620 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597135 other downstream 2970 32658361 ~ 32658922 (-) True LOC117597135
TU88461 other downstream 17358 32644024 ~ 32644534 (-) True G74644
LOC117596950 other downstream 28181 32633213 ~ 32633711 (-) True LOC117596950
TU88440 other downstream 457987 32203394 ~ 32203905 (-) True LOC117596946
LOC117596946 other downstream 457994 32203395 ~ 32203898 (-) False LOC117596946
TU88466 other upstream 2431 32664898 ~ 32665420 (-) False LOC117596929
LOC117596927 other upstream 114499 32776966 ~ 32777798 (-) True LOC117596927
LOC117596938 other upstream 141087 32803554 ~ 32804222 (-) True LOC117596938
LOC117596923 other upstream 147129 32809596 ~ 32810296 (-) True LOC117596923
LOC117597139 other upstream 147965 32810432 ~ 32811735 (-) True LOC117597139

Expression Profile