RNA id: LOC117596930


Basic Information

Item Value
RNA id LOC117596930
length 676
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC117596930
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32034799 ~ 32035593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAGgtgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTTCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGTCAGTGGACGTGTCACACACGCTGAACCACCTCATACACGATTGTCTATTAAACTTGATAAAATGGGAAAGAAAGtagatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577980.1 lncRNA upstream 171642 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 171642 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 186933 31822525 ~ 31847866 (+) False LOC113540254
TU88150 lncRNA upstream 187049 31809876 ~ 31847750 (+) False LOC113540254
TU88389 lncRNA downstream 171768 32207361 ~ 32207824 (+) True G74573
TU88394 lncRNA downstream 248615 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 282839 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 497253 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 653833 32689426 ~ 32690023 (+) True LOC117596965
XM_034304128.1 mRNA upstream 258001 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 258001 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 281132 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 281132 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 328530 31690175 ~ 31706269 (+) True lamc2
XM_026936384.2 mRNA downstream 46326 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA downstream 46326 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA downstream 46326 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA downstream 46326 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA downstream 46326 32081919 ~ 32105291 (+) False LOC113540131
LOC117596940 other upstream 35668 31998544 ~ 31999131 (+) True LOC117596940
LOC117597124 other upstream 59731 31974340 ~ 31975068 (+) True LOC117597124
LOC117597123 other upstream 62520 31970934 ~ 31972279 (+) True LOC117597123
LOC117596936 other upstream 66842 31967199 ~ 31967957 (+) True LOC117596936
LOC117597122 other upstream 69663 31960869 ~ 31965136 (+) True LOC117597122
LOC117596932 other downstream 177666 32213259 ~ 32214313 (+) True LOC117596932
LOC117597126 other downstream 212325 32247918 ~ 32261238 (+) True LOC117597126
LOC117597127 other downstream 233751 32269344 ~ 32272134 (+) True LOC117597127
LOC117596951 other downstream 238442 32274035 ~ 32274523 (+) True LOC117596951
LOC117596933 other downstream 244421 32280014 ~ 32280776 (+) True LOC117596933

Expression Profile