RNA id: LOC117596931


Basic Information

Item Value
RNA id LOC117596931
length 799
RNA type V_segment
GC content 0.41
exon number 2
gene id LOC117596931
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32340495 ~ 32341411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGTGAGGTGTACTTATGGTATCTACTTCTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaattaacacaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAGTtgggatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAAAAACCCTCCAGATTTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTGACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACATGTCACTGAAGCTAAACCACCTCATCCACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGATGGAGctatttacatctttacatcTTGTTTTTGTAAATCTTTAATCACATTTGCACCGACTACAAGTTGTGGtaacagtatattttaaggAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88396 lncRNA upstream 421 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 43961 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 132671 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 477338 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 477338 31859960 ~ 31863157 (+) False LOC117597031
XR_004577915.1 lncRNA downstream 191435 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 348015 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 365682 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 396692 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 555393 32896804 ~ 32924735 (+) True G74672
XM_034303860.1 mRNA upstream 20588 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 235204 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 792944 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 795640 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 833063 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 833063 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 833063 33174474 ~ 33249659 (+) False chd8
LOC117596952 other upstream 1684 32338311 ~ 32338811 (+) True LOC117596952
LOC117596959 other upstream 3913 32336088 ~ 32336582 (+) True LOC117596959
LOC117596937 other upstream 44929 32294241 ~ 32295566 (+) True LOC117596937
TU88393 other upstream 45130 32280217 ~ 32295365 (+) True G74577
LOC117596933 other upstream 59719 32280014 ~ 32280776 (+) True LOC117596933
LOC117596942 other downstream 14585 32355996 ~ 32356585 (+) True LOC117596942
LOC117597129 other downstream 21230 32362641 ~ 32364748 (+) True LOC117597129
LOC117597130 other downstream 26468 32367879 ~ 32369140 (+) True LOC117597130
LOC117596935 other downstream 28448 32369859 ~ 32370818 (+) True LOC117596935
LOC117596960 other downstream 38012 32379423 ~ 32379917 (+) True LOC117596960

Expression Profile