RNA id: LOC117596933


Basic Information

Item Value
RNA id LOC117596933
length 645
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC117596933
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32280014 ~ 32280776 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAACAAACCTCCAGATCTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTCCTGCTGATTAATGAAGCCAGTGGACTTGTCACACATGCTGAACCACCTCATCCACAATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88389 lncRNA upstream 72190 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 416857 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 416857 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 432148 31822525 ~ 31847866 (+) False LOC113540254
TU88131 lncRNA upstream 432264 31810595 ~ 31847750 (+) False LOC113540254
TU88394 lncRNA downstream 3432 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 37656 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 252070 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 408650 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 426317 32707093 ~ 32707498 (+) True G74655
XM_026936385.2 mRNA upstream 174723 32081919 ~ 32105291 (+) False LOC113540131
XM_034303860.1 mRNA downstream 36212 32316988 ~ 32319907 (+) True LOC117597128
XM_034303675.1 mRNA downstream 853579 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 856275 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 893698 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 893698 33174474 ~ 33249659 (+) False chd8
LOC117596951 other upstream 5491 32274035 ~ 32274523 (+) True LOC117596951
LOC117597127 other upstream 7880 32269344 ~ 32272134 (+) True LOC117597127
LOC117597126 other upstream 18776 32247918 ~ 32261238 (+) True LOC117597126
LOC117596932 other upstream 65701 32213259 ~ 32214313 (+) True LOC117596932
TU88369 other upstream 236861 31987395 ~ 32043153 (+) False LOC117596940
LOC117596937 other downstream 13465 32294241 ~ 32295566 (+) True LOC117596937
LOC117596959 other downstream 55312 32336088 ~ 32336582 (+) True LOC117596959
LOC117596952 other downstream 57535 32338311 ~ 32338811 (+) True LOC117596952
LOC117596931 other downstream 59719 32340495 ~ 32341411 (+) True LOC117596931
LOC117596942 other downstream 75220 32355996 ~ 32356585 (+) True LOC117596942

Expression Profile