RNA id: LOC117596936


Basic Information

Item Value
RNA id LOC117596936
length 640
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC117596936
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31967199 ~ 31967957 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAGgtgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGTCAACAGCATTAAACCAGAaaaaccctccagatctgtaaATGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAATCCACAGAACGTGTCACTGAAGCTGAACCACCTCATACACGATTGTCATTTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577980.1 lncRNA upstream 104042 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 104042 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 119333 31822525 ~ 31847866 (+) False LOC113540254
TU88150 lncRNA upstream 119449 31809876 ~ 31847750 (+) False LOC113540254
TU88389 lncRNA downstream 239404 32207361 ~ 32207824 (+) True G74573
TU88394 lncRNA downstream 316251 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 350475 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 564889 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 721469 32689426 ~ 32690023 (+) True LOC117596965
XM_034304128.1 mRNA upstream 190401 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 190401 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 213532 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 213532 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 260930 31690175 ~ 31706269 (+) True lamc2
XM_026936384.2 mRNA downstream 113962 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA downstream 113962 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA downstream 113962 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA downstream 113962 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA downstream 113962 32081919 ~ 32105291 (+) False LOC113540131
LOC117597122 other upstream 2063 31960869 ~ 31965136 (+) True LOC117597122
LOC117597173 other upstream 7532 31959022 ~ 31959667 (+) True LOC117597173
LOC117597174 other upstream 20657 31946048 ~ 31946542 (+) True LOC117597174
XR_004578111.1 other upstream 190401 31769822 ~ 31776798 (+) True LOC113540067
TU87898 other upstream 614055 31351261 ~ 31353144 (+) False c4h22orf39
LOC117597123 other downstream 2977 31970934 ~ 31972279 (+) True LOC117597123
LOC117597124 other downstream 6383 31974340 ~ 31975068 (+) True LOC117597124
TU88369 other downstream 19438 31987395 ~ 32043153 (+) False LOC117596940
TU88370 other downstream 19438 31987395 ~ 32043153 (+) False LOC117596940
LOC117596940 other downstream 30587 31998544 ~ 31999131 (+) True LOC117596940

Expression Profile