Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117596937 |
| length | 1211 |
| RNA type | V_segment |
| GC content | 0.39 |
| exon number | 2 |
| gene id | LOC117596937 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32294241 ~ 32295566 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88389 | lncRNA | upstream | 86417 | 32207361 ~ 32207824 (+) | True | G74573 |
| XR_004577980.1 | lncRNA | upstream | 431084 | 31859960 ~ 31863157 (+) | True | LOC117597031 |
| XR_004577981.1 | lncRNA | upstream | 431084 | 31859960 ~ 31863157 (+) | False | LOC117597031 |
| TU88141 | lncRNA | upstream | 446375 | 31822525 ~ 31847866 (+) | False | LOC113540254 |
| TU88131 | lncRNA | upstream | 446491 | 31810595 ~ 31847750 (+) | False | LOC113540254 |
| TU88396 | lncRNA | downstream | 22866 | 32318432 ~ 32340074 (+) | True | G74580 |
| XR_004577915.1 | lncRNA | downstream | 237280 | 32532846 ~ 32533606 (+) | True | LOC117596964 |
| XR_004577916.1 | lncRNA | downstream | 393860 | 32689426 ~ 32690023 (+) | True | LOC117596965 |
| TU88477 | lncRNA | downstream | 411527 | 32707093 ~ 32707498 (+) | True | G74655 |
| XR_004577921.1 | lncRNA | downstream | 442537 | 32738103 ~ 32740111 (+) | True | LOC117596969 |
| XM_026936385.2 | mRNA | upstream | 188950 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_034303860.1 | mRNA | downstream | 21422 | 32316988 ~ 32319907 (+) | True | LOC117597128 |
| XM_034303675.1 | mRNA | downstream | 838789 | 33134355 ~ 33148431 (+) | False | mmp14b |
| XM_026912173.2 | mRNA | downstream | 841485 | 33137051 ~ 33148431 (+) | False | mmp14b |
| XM_034304145.1 | mRNA | downstream | 878908 | 33174474 ~ 33249659 (+) | True | chd8 |
| XM_034304147.1 | mRNA | downstream | 878908 | 33174474 ~ 33249659 (+) | False | chd8 |
| LOC117596933 | other | upstream | 13465 | 32280014 ~ 32280776 (+) | True | LOC117596933 |
| LOC117596951 | other | upstream | 19718 | 32274035 ~ 32274523 (+) | True | LOC117596951 |
| LOC117597127 | other | upstream | 22107 | 32269344 ~ 32272134 (+) | True | LOC117597127 |
| LOC117597126 | other | upstream | 33003 | 32247918 ~ 32261238 (+) | True | LOC117597126 |
| LOC117596932 | other | upstream | 79928 | 32213259 ~ 32214313 (+) | True | LOC117596932 |
| LOC117596959 | other | downstream | 40522 | 32336088 ~ 32336582 (+) | True | LOC117596959 |
| LOC117596952 | other | downstream | 42745 | 32338311 ~ 32338811 (+) | True | LOC117596952 |
| LOC117596931 | other | downstream | 44929 | 32340495 ~ 32341411 (+) | True | LOC117596931 |
| LOC117596942 | other | downstream | 60430 | 32355996 ~ 32356585 (+) | True | LOC117596942 |
| LOC117597129 | other | downstream | 67075 | 32362641 ~ 32364748 (+) | True | LOC117597129 |
