Item | Value |
---|---|
RNA id | LOC117596939 |
length | 502 |
RNA type | V_segment |
GC content | 0.42 |
exon number | 2 |
gene id | LOC117596939 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047598.1 |
NCBI id | CM018544.1 |
chromosome length | 33267568 |
location | 32492958 ~ 32493624 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU88396 | lncRNA | upstream | 152884 | 32318432 ~ 32340074 (+) | True | G74580 |
TU88394 | lncRNA | upstream | 196424 | 32284208 ~ 32296534 (+) | True | G74578 |
TU88389 | lncRNA | upstream | 285134 | 32207361 ~ 32207824 (+) | True | G74573 |
XR_004577980.1 | lncRNA | upstream | 629801 | 31859960 ~ 31863157 (+) | True | LOC117597031 |
XR_004577915.1 | lncRNA | downstream | 39222 | 32532846 ~ 32533606 (+) | True | LOC117596964 |
XR_004577916.1 | lncRNA | downstream | 195802 | 32689426 ~ 32690023 (+) | True | LOC117596965 |
TU88477 | lncRNA | downstream | 213469 | 32707093 ~ 32707498 (+) | True | G74655 |
XR_004577921.1 | lncRNA | downstream | 244479 | 32738103 ~ 32740111 (+) | True | LOC117596969 |
TU88495 | lncRNA | downstream | 403180 | 32896804 ~ 32924735 (+) | True | G74672 |
XM_034303860.1 | mRNA | upstream | 173051 | 32316988 ~ 32319907 (+) | True | LOC117597128 |
XM_026936383.2 | mRNA | upstream | 387667 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
XM_034303675.1 | mRNA | downstream | 640731 | 33134355 ~ 33148431 (+) | False | mmp14b |
XM_026912173.2 | mRNA | downstream | 643427 | 33137051 ~ 33148431 (+) | False | mmp14b |
XM_034304145.1 | mRNA | downstream | 680850 | 33174474 ~ 33249659 (+) | True | chd8 |
XM_034304147.1 | mRNA | downstream | 680850 | 33174474 ~ 33249659 (+) | False | chd8 |
XM_034304146.1 | mRNA | downstream | 680850 | 33174474 ~ 33249659 (+) | False | chd8 |
LOC117596954 | other | upstream | 16195 | 32476272 ~ 32476763 (+) | True | LOC117596954 |
LOC117597131 | other | upstream | 87857 | 32404548 ~ 32405101 (+) | True | LOC117597131 |
LOC117596953 | other | upstream | 95561 | 32396906 ~ 32397397 (+) | True | LOC117596953 |
LOC117596960 | other | upstream | 113041 | 32379423 ~ 32379917 (+) | True | LOC117596960 |
LOC117596935 | other | upstream | 122140 | 32369859 ~ 32370818 (+) | True | LOC117596935 |
LOC117597132 | other | downstream | 31253 | 32524877 ~ 32527660 (+) | True | LOC117597132 |
LOC117597133 | other | downstream | 49301 | 32542925 ~ 32553304 (+) | True | LOC117597133 |
LOC117596955 | other | downstream | 66639 | 32560263 ~ 32560769 (+) | True | LOC117596955 |
LOC117596941 | other | downstream | 92447 | 32586071 ~ 32586666 (+) | True | LOC117596941 |
TU88419 | other | downstream | 92448 | 32586072 ~ 32586590 (+) | False | LOC117596941 |