Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117596941 |
| length | 448 |
| RNA type | V_segment |
| GC content | 0.43 |
| exon number | 2 |
| gene id | LOC117596941 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32586071 ~ 32586666 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0022624 | proteasome accessory complex | cellular_component |
| GO:0008537 | proteasome activator complex | cellular_component |
| id | description |
|---|---|
| ko03050 | Proteasome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577915.1 | lncRNA | upstream | 52465 | 32532846 ~ 32533606 (+) | True | LOC117596964 |
| TU88396 | lncRNA | upstream | 245997 | 32318432 ~ 32340074 (+) | True | G74580 |
| TU88394 | lncRNA | upstream | 289537 | 32284208 ~ 32296534 (+) | True | G74578 |
| TU88389 | lncRNA | upstream | 378247 | 32207361 ~ 32207824 (+) | True | G74573 |
| XR_004577981.1 | lncRNA | upstream | 722914 | 31859960 ~ 31863157 (+) | False | LOC117597031 |
| XR_004577916.1 | lncRNA | downstream | 102760 | 32689426 ~ 32690023 (+) | True | LOC117596965 |
| TU88477 | lncRNA | downstream | 120427 | 32707093 ~ 32707498 (+) | True | G74655 |
| XR_004577921.1 | lncRNA | downstream | 151437 | 32738103 ~ 32740111 (+) | True | LOC117596969 |
| TU88495 | lncRNA | downstream | 310138 | 32896804 ~ 32924735 (+) | True | G74672 |
| TU88499 | lncRNA | downstream | 328874 | 32915540 ~ 32915973 (+) | True | G74676 |
| XM_034303860.1 | mRNA | upstream | 266164 | 32316988 ~ 32319907 (+) | True | LOC117597128 |
| XM_026936383.2 | mRNA | upstream | 480780 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_034303675.1 | mRNA | downstream | 547689 | 33134355 ~ 33148431 (+) | False | mmp14b |
| XM_026912173.2 | mRNA | downstream | 550385 | 33137051 ~ 33148431 (+) | False | mmp14b |
| XM_034304145.1 | mRNA | downstream | 587808 | 33174474 ~ 33249659 (+) | True | chd8 |
| XM_034304147.1 | mRNA | downstream | 587808 | 33174474 ~ 33249659 (+) | False | chd8 |
| XM_034304146.1 | mRNA | downstream | 587808 | 33174474 ~ 33249659 (+) | False | chd8 |
| LOC117596955 | other | upstream | 25302 | 32560263 ~ 32560769 (+) | True | LOC117596955 |
| LOC117597133 | other | upstream | 32767 | 32542925 ~ 32553304 (+) | True | LOC117597133 |
| LOC117597132 | other | upstream | 58411 | 32524877 ~ 32527660 (+) | True | LOC117597132 |
| LOC117596939 | other | upstream | 92447 | 32492958 ~ 32493624 (+) | True | LOC117596939 |
| LOC117596954 | other | upstream | 109308 | 32476272 ~ 32476763 (+) | True | LOC117596954 |
| LOC117597134 | other | downstream | 8170 | 32594836 ~ 32596942 (+) | True | LOC117597134 |
| TU88470 | other | downstream | 101651 | 32688317 ~ 32688797 (+) | True | G74651 |
| XR_004577917.1 | other | downstream | 102760 | 32689426 ~ 32690032 (+) | False | LOC117596965 |
| LOC117596958 | other | downstream | 106937 | 32693603 ~ 32694103 (+) | True | LOC117596958 |
| LOC117597136 | other | downstream | 113111 | 32699777 ~ 32714861 (+) | True | LOC117597136 |
