RNA id: TU88419


Basic Information

Item Value
RNA id TU88419
length 371
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC117596941
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32586071 ~ 32586666 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTACTGCAAGAGAGACACTCACAACAATCATGTTcctcttctttgttttcataGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTCTCTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGCATTATTATATCTACAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCACCAGActccataaaaatgaaaagaaaatagatcTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577915.1 lncRNA upstream 52466 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 245998 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 289538 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 378248 32207361 ~ 32207824 (+) True G74573
XR_004577981.1 lncRNA upstream 722915 31859960 ~ 31863157 (+) False LOC117597031
XR_004577916.1 lncRNA downstream 102836 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 120503 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 151513 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 310214 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 328950 32915540 ~ 32915973 (+) True G74676
XM_034303860.1 mRNA upstream 266165 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 480781 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 547765 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 550461 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 587884 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 587884 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 587884 33174474 ~ 33249659 (+) False chd8
LOC117596955 other upstream 25303 32560263 ~ 32560769 (+) True LOC117596955
LOC117597133 other upstream 32768 32542925 ~ 32553304 (+) True LOC117597133
LOC117597132 other upstream 58412 32524877 ~ 32527660 (+) True LOC117597132
LOC117596939 other upstream 92448 32492958 ~ 32493624 (+) True LOC117596939
LOC117596954 other upstream 109309 32476272 ~ 32476763 (+) True LOC117596954
LOC117597134 other downstream 8246 32594836 ~ 32596942 (+) True LOC117597134
TU88470 other downstream 101727 32688317 ~ 32688797 (+) True G74651
XR_004577917.1 other downstream 102836 32689426 ~ 32690032 (+) False LOC117596965
LOC117596958 other downstream 107013 32693603 ~ 32694103 (+) True LOC117596958
LOC117597136 other downstream 113187 32699777 ~ 32714861 (+) True LOC117597136

Expression Profile