RNA id: LOC117596942


Basic Information

Item Value
RNA id LOC117596942
length 442
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596942
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32355996 ~ 32356585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAAGAGAGACACTCACAACAATCATGTTactcttctttgttttcataGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTCTCTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGCATTATTATATCTACAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCACCAGActccataaaaatgaaaagaaaatagatcTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGTAACAGGaaactcaaacacactgtacaaaaagtGAAGCTGGATTTTCTCTCAGGAGGGGGAGCTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88396 lncRNA upstream 15922 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 59462 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 148172 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 492839 31859960 ~ 31863157 (+) True LOC117597031
XR_004577915.1 lncRNA downstream 176261 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 332841 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 350508 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 381518 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 540219 32896804 ~ 32924735 (+) True G74672
XM_034303860.1 mRNA upstream 36089 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 250705 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 777770 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 780466 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 817889 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 817889 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 817889 33174474 ~ 33249659 (+) False chd8
LOC117596931 other upstream 14585 32340495 ~ 32341411 (+) True LOC117596931
LOC117596952 other upstream 17185 32338311 ~ 32338811 (+) True LOC117596952
LOC117596959 other upstream 19414 32336088 ~ 32336582 (+) True LOC117596959
LOC117596937 other upstream 60430 32294241 ~ 32295566 (+) True LOC117596937
TU88393 other upstream 60631 32280217 ~ 32295365 (+) True G74577
LOC117597129 other downstream 6056 32362641 ~ 32364748 (+) True LOC117597129
LOC117597130 other downstream 11294 32367879 ~ 32369140 (+) True LOC117597130
LOC117596935 other downstream 13274 32369859 ~ 32370818 (+) True LOC117596935
LOC117596960 other downstream 22838 32379423 ~ 32379917 (+) True LOC117596960
LOC117596953 other downstream 40321 32396906 ~ 32397397 (+) True LOC117596953

Expression Profile