RNA id: LOC117596943


Basic Information

Item Value
RNA id LOC117596943
length 418
RNA type V_segment
GC content 0.44
exon number 2
gene id LOC117596943
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32714954 ~ 32715523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACAATCATGTTactcttctttgttttcataGCTGTTAAAAACATTGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTGCTGCTGAGGATTTTTATATCTTCAGGTGATGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTCCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGcagtatcagactctgcactgtactactgcgccatggagcccacagtgacacaaaactcaaacacactgtacaaaaagtGAAGCTGGATTTTCTCTCAGGAGGGGGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88477 lncRNA upstream 7456 32707093 ~ 32707498 (+) True G74655
XR_004577916.1 lncRNA upstream 24931 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 181348 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 374880 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 418420 32284208 ~ 32296534 (+) True G74578
XR_004577921.1 lncRNA downstream 22580 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 181281 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 200017 32915540 ~ 32915973 (+) True G74676
TU88509 lncRNA downstream 308453 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 410145 33125668 ~ 33125884 (+) True G74747
XM_034303860.1 mRNA upstream 395047 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 609663 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 418832 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 421528 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 458951 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 458951 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 458951 33174474 ~ 33249659 (+) False chd8
LOC117597136 other upstream 93 32699777 ~ 32714861 (+) True LOC117597136
LOC117596958 other upstream 20851 32693603 ~ 32694103 (+) True LOC117596958
XR_004577917.1 other upstream 24922 32689426 ~ 32690032 (+) False LOC117596965
TU88470 other upstream 26157 32688317 ~ 32688797 (+) True G74651
LOC117597134 other upstream 118012 32594836 ~ 32596942 (+) True LOC117597134
TU88480 other downstream 4433 32719956 ~ 32720432 (+) False LOC117596949
LOC117596949 other downstream 4441 32719964 ~ 32720464 (+) True LOC117596949
LOC117597137 other downstream 6301 32721824 ~ 32736271 (+) True LOC117597137
TU88484 other downstream 26742 32742265 ~ 32742970 (+) True LOC117596925
LOC117596925 other downstream 26948 32742471 ~ 32743137 (+) False LOC117596925

Expression Profile