RNA id: LOC117596949


Basic Information

Item Value
RNA id LOC117596949
length 336
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596949
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32713173 ~ 32720464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcagctACAAAAAATTCAGTGCTACCGTAAACaacctgcagtggtacagacaatatccagaatctaaacctgagttccttctgTACATCACTCCAAGTGGATTTCAAAGTGATCCTATTTCACCACGTCTGTCTGCTAAAGTTCCTGGAGATAAAcaagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88477 lncRNA upstream 12466 32707093 ~ 32707498 (+) True G74655
XR_004577916.1 lncRNA upstream 29941 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 186358 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 379890 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 423430 32284208 ~ 32296534 (+) True G74578
XR_004577921.1 lncRNA downstream 17639 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 176340 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 195076 32915540 ~ 32915973 (+) True G74676
TU88509 lncRNA downstream 303512 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 405204 33125668 ~ 33125884 (+) True G74747
XM_034303860.1 mRNA upstream 400057 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 614673 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 413891 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 416587 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 454010 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 454010 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 454010 33174474 ~ 33249659 (+) False chd8
LOC117596943 other upstream 4441 32714954 ~ 32715523 (+) True LOC117596943
LOC117597136 other upstream 5103 32699777 ~ 32714861 (+) True LOC117597136
LOC117596958 other upstream 25861 32693603 ~ 32694103 (+) True LOC117596958
XR_004577917.1 other upstream 29932 32689426 ~ 32690032 (+) False LOC117596965
TU88470 other upstream 31167 32688317 ~ 32688797 (+) True G74651
LOC117597137 other downstream 1360 32721824 ~ 32736271 (+) True LOC117597137
TU88484 other downstream 21801 32742265 ~ 32742970 (+) True LOC117596925
LOC117596925 other downstream 22007 32742471 ~ 32743137 (+) False LOC117596925
LOC117597138 other downstream 25036 32745500 ~ 32747793 (+) True LOC117597138
LOC117596944 other downstream 160247 32880711 ~ 32881365 (+) True LOC117596944

Expression Profile