RNA id: LOC117596952


Basic Information

Item Value
RNA id LOC117596952
length 336
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596952
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32338311 ~ 32338811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataCGAAATCAAAAGTGCTACAGGAAACaacctgcagtggtacagacaatatctaAAATCTAAACCCGAGTTTGTTCTCTATATTACTCCAAGTGGAACTCTGAGTCCCAACCCTcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88394 lncRNA upstream 41777 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 130487 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 475154 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 475154 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 490445 31822525 ~ 31847866 (+) False LOC113540254
XR_004577915.1 lncRNA downstream 194035 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 350615 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 368282 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 399292 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 557993 32896804 ~ 32924735 (+) True G74672
XM_034303860.1 mRNA upstream 18404 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 233020 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 795544 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 798240 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 835663 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 835663 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 835663 33174474 ~ 33249659 (+) False chd8
LOC117596959 other upstream 1729 32336088 ~ 32336582 (+) True LOC117596959
TU88365 other upstream 7466 31959042 ~ 32330845 (+) False LOC117597173
LOC117596937 other upstream 42745 32294241 ~ 32295566 (+) True LOC117596937
TU88393 other upstream 42946 32280217 ~ 32295365 (+) True G74577
LOC117596933 other upstream 57535 32280014 ~ 32280776 (+) True LOC117596933
LOC117596931 other downstream 1684 32340495 ~ 32341411 (+) True LOC117596931
LOC117596942 other downstream 17185 32355996 ~ 32356585 (+) True LOC117596942
LOC117597129 other downstream 23830 32362641 ~ 32364748 (+) True LOC117597129
LOC117597130 other downstream 29068 32367879 ~ 32369140 (+) True LOC117597130
LOC117596935 other downstream 31048 32369859 ~ 32370818 (+) True LOC117596935

Expression Profile