RNA id: LOC117596954


Basic Information

Item Value
RNA id LOC117596954
length 327
RNA type V_segment
GC content 0.44
exon number 2
gene id LOC117596954
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32476272 ~ 32476763 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcatgtagttgtagatgaaggtgatgatgttactctgtcctgcaactACAGTGCTGCTGTACAGAAtctgcagtggtacagacaatatccaaaatctaaaccggagttccttctttatatttttgaaagtgGAGCTATGAGTCCAGATCTCcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection
ko05310 Asthma
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88396 lncRNA upstream 136198 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 179738 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 268448 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 613115 31859960 ~ 31863157 (+) True LOC117597031
XR_004577915.1 lncRNA downstream 56083 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 212663 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 230330 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 261340 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 420041 32896804 ~ 32924735 (+) True G74672
XM_034303860.1 mRNA upstream 156365 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 370981 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 657592 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 660288 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 697711 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 697711 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 697711 33174474 ~ 33249659 (+) False chd8
LOC117597131 other upstream 71171 32404548 ~ 32405101 (+) True LOC117597131
LOC117596953 other upstream 78875 32396906 ~ 32397397 (+) True LOC117596953
LOC117596960 other upstream 96355 32379423 ~ 32379917 (+) True LOC117596960
LOC117596935 other upstream 105454 32369859 ~ 32370818 (+) True LOC117596935
LOC117597130 other upstream 107132 32367879 ~ 32369140 (+) True LOC117597130
LOC117596939 other downstream 16195 32492958 ~ 32493624 (+) True LOC117596939
LOC117597132 other downstream 48114 32524877 ~ 32527660 (+) True LOC117597132
LOC117597133 other downstream 66162 32542925 ~ 32553304 (+) True LOC117597133
LOC117596955 other downstream 83500 32560263 ~ 32560769 (+) True LOC117596955
LOC117596941 other downstream 109308 32586071 ~ 32586666 (+) True LOC117596941

Expression Profile