RNA id: LOC117596955


Basic Information

Item Value
RNA id LOC117596955
length 342
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596955
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32560263 ~ 32560769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgcctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataCGAAACAAGTGATGCATACCCCTACCTGcactggtacagacaatatccaaaatctaaaccggAGTTCCTCCTTTATATTTCTCAACGtggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttgataaaaataatgataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577915.1 lncRNA upstream 26657 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 220189 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 263729 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 352439 32207361 ~ 32207824 (+) True G74573
XR_004577981.1 lncRNA upstream 697106 31859960 ~ 31863157 (+) False LOC117597031
XR_004577916.1 lncRNA downstream 128657 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 146324 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 177334 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 336035 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 354771 32915540 ~ 32915973 (+) True G74676
XM_034303860.1 mRNA upstream 240356 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 454972 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 573586 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 576282 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 613705 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 613705 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 613705 33174474 ~ 33249659 (+) False chd8
LOC117597133 other upstream 6959 32542925 ~ 32553304 (+) True LOC117597133
LOC117597132 other upstream 32603 32524877 ~ 32527660 (+) True LOC117597132
LOC117596939 other upstream 66639 32492958 ~ 32493624 (+) True LOC117596939
LOC117596954 other upstream 83500 32476272 ~ 32476763 (+) True LOC117596954
LOC117597131 other upstream 155162 32404548 ~ 32405101 (+) True LOC117597131
LOC117596941 other downstream 25302 32586071 ~ 32586666 (+) True LOC117596941
TU88419 other downstream 25303 32586072 ~ 32586590 (+) False LOC117596941
LOC117597134 other downstream 34067 32594836 ~ 32596942 (+) True LOC117597134
TU88470 other downstream 127548 32688317 ~ 32688797 (+) True G74651
XR_004577917.1 other downstream 128657 32689426 ~ 32690032 (+) False LOC117596965

Expression Profile