RNA id: LOC117596958


Basic Information

Item Value
RNA id LOC117596958
length 336
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596958
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32693603 ~ 32694103 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtcgCTTTCattaggtgactccatggcagattcaatacagtcactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcaaataCCCCACAAGTTATACAGGAGGCAccctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttctcaaactggagctctgagtcccaaCCCTcccccaagaatgtctgctgaagttgatgataataataaacaagtggatctgctcatctcccctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577916.1 lncRNA upstream 3580 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 159997 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 353529 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 397069 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 485779 32207361 ~ 32207824 (+) True G74573
TU88477 lncRNA downstream 12990 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 44000 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 202701 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 221437 32915540 ~ 32915973 (+) True G74676
TU88509 lncRNA downstream 329873 33023976 ~ 33024331 (+) True G74686
XM_034303860.1 mRNA upstream 373696 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 588312 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 440252 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 442948 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 480371 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 480371 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 480371 33174474 ~ 33249659 (+) False chd8
XR_004577917.1 other upstream 3571 32689426 ~ 32690032 (+) False LOC117596965
TU88470 other upstream 4806 32688317 ~ 32688797 (+) True G74651
LOC117597134 other upstream 96661 32594836 ~ 32596942 (+) True LOC117597134
LOC117596941 other upstream 106937 32586071 ~ 32586666 (+) True LOC117596941
TU88419 other upstream 107013 32586072 ~ 32586590 (+) False LOC117596941
LOC117597136 other downstream 5674 32699777 ~ 32714861 (+) True LOC117597136
TU88479 other downstream 19070 32713173 ~ 32720432 (+) False LOC117596949
LOC117596943 other downstream 20851 32714954 ~ 32715523 (+) True LOC117596943
TU88480 other downstream 25853 32719956 ~ 32720432 (+) False LOC117596949
LOC117596949 other downstream 25861 32719964 ~ 32720464 (+) True LOC117596949

Expression Profile