RNA id: LOC117596959


Basic Information

Item Value
RNA id LOC117596959
length 330
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596959
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32336088 ~ 32336582 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcagctACAGTGGTTCAGTAGACGccctgcagtggtacagacaatatccaaaatctaaacctgagttccttcttttCATCACTCCAAGTGGATTTAAAACTGACCCTCTTCCATCACGTCTGTTTCCTAAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88394 lncRNA upstream 39554 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 128264 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 472931 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 472931 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 488222 31822525 ~ 31847866 (+) False LOC113540254
XR_004577915.1 lncRNA downstream 196264 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 352844 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 370511 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 401521 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 560222 32896804 ~ 32924735 (+) True G74672
XM_034303860.1 mRNA upstream 16181 32316988 ~ 32319907 (+) True LOC117597128
XM_026936385.2 mRNA upstream 230797 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 797773 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 800469 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 837892 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 837892 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 837892 33174474 ~ 33249659 (+) False chd8
TU88365 other upstream 5243 31959042 ~ 32330845 (+) False LOC117597173
LOC117596937 other upstream 40522 32294241 ~ 32295566 (+) True LOC117596937
TU88393 other upstream 40723 32280217 ~ 32295365 (+) True G74577
LOC117596933 other upstream 55312 32280014 ~ 32280776 (+) True LOC117596933
LOC117596951 other upstream 61565 32274035 ~ 32274523 (+) True LOC117596951
LOC117596952 other downstream 1729 32338311 ~ 32338811 (+) True LOC117596952
LOC117596931 other downstream 3913 32340495 ~ 32341411 (+) True LOC117596931
LOC117596942 other downstream 19414 32355996 ~ 32356585 (+) True LOC117596942
LOC117597129 other downstream 26059 32362641 ~ 32364748 (+) True LOC117597129
LOC117597130 other downstream 31297 32367879 ~ 32369140 (+) True LOC117597130

Expression Profile