RNA id: LOC117596960


Basic Information

Item Value
RNA id LOC117596960
length 330
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC117596960
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32379423 ~ 32379917 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgatgatgttactctgtcctgcaaatacagtgtttcagtaaacaacctgcagtggtacagacaatgtccaaaatctaaacctgagttccttcttttCATCACTCCAAGTGGATTTAAAACTGACCCTCTTCCACCACGTCTGTTTCCTAAAgttgatgataaaaataaacaagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgcgctctg

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88396 lncRNA upstream 39349 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 82889 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 171599 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 516266 31859960 ~ 31863157 (+) True LOC117597031
XR_004577915.1 lncRNA downstream 152929 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 309509 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 327176 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 358186 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 516887 32896804 ~ 32924735 (+) True G74672
XM_034303860.1 mRNA upstream 59516 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 274132 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 754438 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 757134 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 794557 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 794557 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 794557 33174474 ~ 33249659 (+) False chd8
LOC117596935 other upstream 8605 32369859 ~ 32370818 (+) True LOC117596935
LOC117597130 other upstream 10283 32367879 ~ 32369140 (+) True LOC117597130
LOC117597129 other upstream 14675 32362641 ~ 32364748 (+) True LOC117597129
LOC117596942 other upstream 22838 32355996 ~ 32356585 (+) True LOC117596942
LOC117596931 other upstream 38012 32340495 ~ 32341411 (+) True LOC117596931
LOC117596953 other downstream 16989 32396906 ~ 32397397 (+) True LOC117596953
LOC117597131 other downstream 24631 32404548 ~ 32405101 (+) True LOC117597131
LOC117596954 other downstream 96355 32476272 ~ 32476763 (+) True LOC117596954
LOC117596939 other downstream 113041 32492958 ~ 32493624 (+) True LOC117596939
LOC117597132 other downstream 144960 32524877 ~ 32527660 (+) True LOC117597132

Expression Profile