RNA id: LOC117596961


Basic Information

Item Value
RNA id LOC117596961
length 311
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117596961
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32131951 ~ 32132467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataTGACACAAGAGCTACAGGAAATtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttatgaaagTGGAGCTATGAGTCCAGATCTCcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577914.1 lncRNA downstream 19550 32111586 ~ 32112411 (-) True LOC113540655
XR_004578081.1 lncRNA downstream 222047 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA downstream 222047 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA downstream 222047 31908648 ~ 31909914 (-) True LOC117597178
TU88356 lncRNA downstream 230404 31893851 ~ 31901557 (-) True G74553
TU88436 lncRNA upstream 31618 32164054 ~ 32164414 (-) True G74619
TU88439 lncRNA upstream 67929 32200365 ~ 32200804 (-) True G74622
XR_004577913.1 lncRNA upstream 69645 32202081 ~ 32202854 (-) True LOC117596963
TU88457 lncRNA upstream 495125 32627561 ~ 32627996 (-) True G74640
XR_004577912.1 lncRNA upstream 514845 32647281 ~ 32648098 (-) True LOC117596962
XM_026935889.2 mRNA downstream 404409 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 587327 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 598703 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 662320 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 691122 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 840349 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 998651 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 998651 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 998651 33131087 ~ 33134319 (-) True c4h14orf119
LOC117595679 other downstream 5499 32125572 ~ 32126462 (-) True LOC117595679
TU88425 other downstream 18506 32074383 ~ 32113455 (-) True LOC117596957
LOC117596957 other downstream 57073 32074388 ~ 32074888 (-) False LOC117596957
TU88423 other downstream 64624 32066812 ~ 32067337 (-) True G74607
LOC117597180 other downstream 199898 31931305 ~ 31932063 (-) True LOC117597180
LOC117596956 other upstream 12023 32144459 ~ 32144943 (-) True LOC117596956
TU88432 other upstream 16759 32149195 ~ 32149797 (-) True G74615
LOC113540132 other upstream 36146 32168582 ~ 32169236 (-) True LOC113540132
LOC117596948 other upstream 42482 32174918 ~ 32175410 (-) True LOC117596948
LOC117597125 other upstream 43371 32175807 ~ 32178124 (-) True LOC117597125

Expression Profile