RNA id: LOC117597009


Basic Information

Item Value
RNA id LOC117597009
length 345
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC117597009
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33034903 ~ 33042101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcaaataCAAACCCAGCAGTGCTACAGGAAATtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttttcaaaatggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttgacaataataatgataataaacgagtggatctgctcatctcctctgctgctatatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88545 lncRNA downstream 3478 33031042 ~ 33031426 (-) True G74720
TU88542 lncRNA downstream 9058 33025421 ~ 33025846 (-) True G74717
XR_004578073.1 lncRNA downstream 87746 32946134 ~ 32947158 (-) True LOC117597171
XR_004577918.1 lncRNA downstream 161881 32871746 ~ 32873023 (-) True LOC117596966
TU88526 lncRNA downstream 172245 32862207 ~ 32862659 (-) True G74702
TU88554 lncRNA upstream 22547 33057960 ~ 33058362 (-) False LOC117597193
TU88557 lncRNA upstream 47126 33082539 ~ 33082974 (-) False LOC117597189
TU88558 lncRNA upstream 48985 33084398 ~ 33084836 (-) True G74731
XR_004577944.1 lncRNA upstream 54793 33090206 ~ 33091128 (-) True LOC117596990
TU88563 lncRNA upstream 72716 33108129 ~ 33108638 (-) True G74736
XM_034303864.1 mRNA downstream 57204 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 209337 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1307352 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1490270 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1501646 31528370 ~ 31533258 (-) True psmb5
XM_026912180.2 mRNA upstream 95674 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 95674 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 95674 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 130529 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 130529 33165942 ~ 33168020 (-) True cbln12
LOC117597007 other downstream 1243 33033018 ~ 33033661 (-) True LOC117597007
LOC117597142 other downstream 38012 32996356 ~ 32996892 (-) True LOC117597142
LOC117597177 other downstream 63391 32971004 ~ 32971513 (-) True LOC117597177
LOC117597170 other downstream 84410 32949834 ~ 32950494 (-) True LOC117597170
TU88533 other downstream 88104 32946181 ~ 32946800 (-) False LOC117597171
LOC117597008 other upstream 1648 33037061 ~ 33037706 (-) True LOC117597008
LOC117597193 other upstream 22085 33057498 ~ 33058351 (-) True LOC117597193
LOC117597189 other upstream 46784 33082197 ~ 33083322 (-) True LOC117597189
XR_004577945.1 other upstream 54793 33090206 ~ 33091128 (-) False LOC117596990
LOC117597195 other upstream 63338 33098751 ~ 33099488 (-) True LOC117597195

Expression Profile