RNA id: LOC117597010


Basic Information

Item Value
RNA id LOC117597010
length 1239
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117597010
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31870518 ~ 31871874 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTACTTCTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGACTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACGTGTCACACAAGCTGAACCACCTCATCCACGATTATCTATGAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGATGGAGctatttacatctttacattCACTTCTTCAGCTCTCTGTCTATGATGTCAGATTAACCATCATCTTTGCACCGATGAGACGGTAAAACCTTCACAAAACATCTGCAGTGACTGACTCTGTAGTGTACAGCTGTGTCATGGAGCCCACAGTGACAGCAAACCCAGATACATAGTACAAAGTGTTTCATATGACAGATTCATATTATACAAAGGGTTTTCTCAGTTCCTCATCACTGCTGCAGTTATAGATTTTCCCGAGCCGTCCCTATGGCCTGAGAATGTCATTCATCAATCCCAATAATCAGAGCTTCCTTTGTATGAGGAGTTGTTAGCTCAGCTACAACCTAGTCTGTTGGTTAACTGCTCATTATCTCCTTCTTGCACTGATCACTGACTTCTGAAGACCATGCTGTCAGGTTCCCCAGGACAGGAACATGGACCCAGTGGACACTGTGGATCAGAACCCCAGTAAACACTCTGTTCTGGACATTCTTGCAGCATTACAGCTACAACATTACTGCTACATGTGATTTCTTTGCTCTATTCTAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88244 lncRNA downstream 84761 31736292 ~ 31785757 (-) True G74458
TU88242 lncRNA downstream 114214 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA downstream 114214 31753121 ~ 31756304 (-) False G74457
TU88271 lncRNA downstream 125056 31744351 ~ 31745462 (-) True G74479
TU88199 lncRNA downstream 219934 31567051 ~ 31650584 (-) True G74417
TU88356 lncRNA upstream 21977 31893851 ~ 31901557 (-) True G74553
XR_004578081.1 lncRNA upstream 36774 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA upstream 36774 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA upstream 36774 31908648 ~ 31909914 (-) True LOC117597178
XR_004577914.1 lncRNA upstream 239712 32111586 ~ 32112411 (-) True LOC113540655
XM_026935889.2 mRNA downstream 142966 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 325884 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 337260 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 400877 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 951684 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1100911 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1259213 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1259213 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1259213 33131087 ~ 33134319 (-) True c4h14orf119
LOC113540068 other downstream 510 31867082 ~ 31870008 (-) True LOC113540068
TU87656 other downstream 1094699 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 1126692 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1847993 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 2139661 29724588 ~ 29730857 (-) True zgc:110366
TU88350 other upstream 2435 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 8160 31880034 ~ 31880556 (-) True G74550
LOC117597011 other upstream 11069 31882943 ~ 31883607 (-) True LOC117597011
LOC117597121 other upstream 33752 31905626 ~ 31910974 (-) True LOC117597121
LOC117597180 other upstream 59431 31931305 ~ 31932063 (-) True LOC117597180

Expression Profile