RNA id: LOC117597011


Basic Information

Item Value
RNA id LOC117597011
length 500
RNA type V_segment
GC content 0.41
exon number 2
gene id LOC117597011
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31882943 ~ 31883607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcatgtgtctgtggctttcactaggtgactccatggcaaattcaatacagccacttttcACAACTCCtaaagttgtagatgaaggtgataatgttactctgtcctgcagatACACAACCAGCAGTGCTATAGCAAACAACTACCTGcactggtacagacaatatccaaaatctaaacctgagttccttctttatatttctcaacGTGGAGATCTGAGTCCCAACCCTCCCtcaagaatgtctgctaaagttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctggcgcccacagtgacaggaaatccaactgcactgtacaaaaactacagTTTTATTCTACAGTGTTGAGCCTCATCAGCAGAATGAAGagtctacacacagagagaaggtcggatttgtttaaagtgagaatgtgaaataatgatttaacatttcagttttcttcctttcat

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88244 lncRNA downstream 97186 31736292 ~ 31785757 (-) True G74458
TU88242 lncRNA downstream 126639 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA downstream 126639 31753121 ~ 31756304 (-) False G74457
TU88271 lncRNA downstream 137481 31744351 ~ 31745462 (-) True G74479
TU88199 lncRNA downstream 232359 31567051 ~ 31650584 (-) True G74417
TU88356 lncRNA upstream 10244 31893851 ~ 31901557 (-) True G74553
XR_004578081.1 lncRNA upstream 25041 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA upstream 25041 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA upstream 25041 31908648 ~ 31909914 (-) True LOC117597178
XR_004577914.1 lncRNA upstream 227979 32111586 ~ 32112411 (-) True LOC113540655
XM_026935889.2 mRNA downstream 155391 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 338309 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 349685 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 413302 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 939951 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1089178 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1247480 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1247480 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1247480 33131087 ~ 33134319 (-) True c4h14orf119
TU88353 other downstream 2387 31880034 ~ 31880556 (-) True G74550
TU88350 other downstream 8116 31874309 ~ 31874827 (-) True G74547
LOC117597010 other downstream 11069 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other downstream 11304 31871159 ~ 31871639 (-) False LOC117597010
LOC113540068 other downstream 12935 31867082 ~ 31870008 (-) True LOC113540068
LOC117597121 other upstream 22019 31905626 ~ 31910974 (-) True LOC117597121
LOC117597180 other upstream 47698 31931305 ~ 31932063 (-) True LOC117597180
TU88423 other upstream 183205 32066812 ~ 32067337 (-) True G74607
TU88425 other upstream 190776 32074383 ~ 32113455 (-) True LOC117596957
LOC117596957 other upstream 190781 32074388 ~ 32074888 (-) False LOC117596957

Expression Profile