RNA id: LOC117597121


Basic Information

Item Value
RNA id LOC117597121
length 423
RNA type V_segment
GC content 0.44
exon number 4
gene id LOC117597121
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31905626 ~ 31910974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgatgatgttactctgtcctgcaactACACAACCACCAGTACTGCAGCAGGCACCTACCTGcactggtacagacaatatccagaatctaaacctgagttccttctgTACATCACTGGAAGTGGACTTAAAGGTGACCCTATTTCACCACATCTATCTGCTGAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctcTAACGGGGGGAAACCGATCATCTTTACAGCGTCTTCAAATACATTCAATCACTGGTTATGgaaaactgctgcatcagatctAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88356 lncRNA downstream 4069 31893851 ~ 31901557 (-) True G74553
TU88244 lncRNA downstream 119869 31736292 ~ 31785757 (-) True G74458
TU88242 lncRNA downstream 149322 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA downstream 149322 31753121 ~ 31756304 (-) False G74457
TU88271 lncRNA downstream 160164 31744351 ~ 31745462 (-) True G74479
XR_004577914.1 lncRNA upstream 200612 32111586 ~ 32112411 (-) True LOC113540655
TU88436 lncRNA upstream 253080 32164054 ~ 32164414 (-) True G74619
TU88439 lncRNA upstream 289391 32200365 ~ 32200804 (-) True G74622
XR_004577913.1 lncRNA upstream 291107 32202081 ~ 32202854 (-) True LOC117596963
TU88457 lncRNA upstream 716587 32627561 ~ 32627996 (-) True G74640
XM_026935889.2 mRNA downstream 178074 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 360992 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 372368 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 435985 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 912584 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1061811 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1220113 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1220113 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1220113 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597011 other downstream 22019 31882943 ~ 31883607 (-) True LOC117597011
TU88353 other downstream 25070 31880034 ~ 31880556 (-) True G74550
TU88350 other downstream 30799 31874309 ~ 31874827 (-) True G74547
LOC117597010 other downstream 33752 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other downstream 33987 31871159 ~ 31871639 (-) False LOC117597010
LOC117597180 other upstream 20331 31931305 ~ 31932063 (-) True LOC117597180
TU88423 other upstream 155838 32066812 ~ 32067337 (-) True G74607
TU88425 other upstream 163409 32074383 ~ 32113455 (-) True LOC117596957
LOC117596957 other upstream 163414 32074388 ~ 32074888 (-) False LOC117596957
LOC117595679 other upstream 214598 32125572 ~ 32126462 (-) True LOC117595679

Expression Profile