RNA id: LOC117597122


Basic Information

Item Value
RNA id LOC117597122
length 354
RNA type V_segment
GC content 0.42
exon number 3
gene id LOC117597122
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31960869 ~ 31965136 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCtaaagttgtagatgaaggtgatgaagttactctgtcctgcagctACAAAGGCTTCAGTGGTAGCATATACAATgtgcagtggtacagacaatatccaaaatctaaacccgAGTTTGTTCTCTATATTACTCCAAGTGGAGATCTGAGTTCCAGCAGACCtccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtAAAAGACAAGTTCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577980.1 lncRNA upstream 97712 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 97712 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 113003 31822525 ~ 31847866 (+) False LOC113540254
TU88150 lncRNA upstream 113119 31809876 ~ 31847750 (+) False LOC113540254
TU88389 lncRNA downstream 242225 32207361 ~ 32207824 (+) True G74573
TU88394 lncRNA downstream 319072 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 353296 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 567710 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 724290 32689426 ~ 32690023 (+) True LOC117596965
XM_034304128.1 mRNA upstream 184071 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 184071 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 207202 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 207202 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 254600 31690175 ~ 31706269 (+) True lamc2
XM_026936384.2 mRNA downstream 116783 32081919 ~ 32105291 (+) False LOC113540131
XM_026936385.2 mRNA downstream 116783 32081919 ~ 32105291 (+) False LOC113540131
XM_026936383.2 mRNA downstream 116783 32081919 ~ 32105291 (+) False LOC113540131
XM_034303207.1 mRNA downstream 116783 32081919 ~ 32105291 (+) False LOC113540131
XM_034303208.1 mRNA downstream 116783 32081919 ~ 32105291 (+) False LOC113540131
LOC117597173 other upstream 1202 31959022 ~ 31959667 (+) True LOC117597173
LOC117597174 other upstream 14327 31946048 ~ 31946542 (+) True LOC117597174
XR_004578111.1 other upstream 184071 31769822 ~ 31776798 (+) True LOC113540067
TU87898 other upstream 607725 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 862981 31061730 ~ 31097888 (+) False spsb4a
LOC117596936 other downstream 2063 31967199 ~ 31967957 (+) True LOC117596936
LOC117597123 other downstream 5798 31970934 ~ 31972279 (+) True LOC117597123
LOC117597124 other downstream 9204 31974340 ~ 31975068 (+) True LOC117597124
TU88369 other downstream 22259 31987395 ~ 32043153 (+) False LOC117596940
TU88370 other downstream 22259 31987395 ~ 32043153 (+) False LOC117596940

Expression Profile