RNA id: LOC117597127


Basic Information

Item Value
RNA id LOC117597127
length 369
RNA type V_segment
GC content 0.43
exon number 3
gene id LOC117597127
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32269344 ~ 32272134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccacttttcACAACTCCtaaagttgtagatgaaggtgttaacgttactctgtcctgcagatACGAAACTACCAGTAGTGCAGCAAACACCTACCTGcactggtacagacaatatccaaaatctaaacctgagttcctaCTTTACATCACTGCAAATGGCCGTAAAAGTGACCCTCTTCCATCACGTCTGTCTGCTGAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtAGACgtagcacagtaatacagagtcagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88389 lncRNA upstream 61520 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 406187 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 406187 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 421478 31822525 ~ 31847866 (+) False LOC113540254
TU88131 lncRNA upstream 421594 31810595 ~ 31847750 (+) False LOC113540254
TU88394 lncRNA downstream 12074 32284208 ~ 32296534 (+) True G74578
TU88396 lncRNA downstream 46298 32318432 ~ 32340074 (+) True G74580
XR_004577915.1 lncRNA downstream 260712 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 417292 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 434959 32707093 ~ 32707498 (+) True G74655
XM_026936385.2 mRNA upstream 164053 32081919 ~ 32105291 (+) False LOC113540131
XM_034303860.1 mRNA downstream 44854 32316988 ~ 32319907 (+) True LOC117597128
XM_034303675.1 mRNA downstream 862221 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 864917 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 902340 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 902340 33174474 ~ 33249659 (+) False chd8
LOC117597126 other upstream 8106 32247918 ~ 32261238 (+) True LOC117597126
LOC117596932 other upstream 55031 32213259 ~ 32214313 (+) True LOC117596932
TU88369 other upstream 226191 31987395 ~ 32043153 (+) False LOC117596940
TU88370 other upstream 226191 31987395 ~ 32043153 (+) False LOC117596940
LOC117596930 other upstream 233751 32034799 ~ 32035593 (+) True LOC117596930
LOC117596951 other downstream 1901 32274035 ~ 32274523 (+) True LOC117596951
LOC117596933 other downstream 7880 32280014 ~ 32280776 (+) True LOC117596933
TU88393 other downstream 8083 32280217 ~ 32295365 (+) True G74577
LOC117596937 other downstream 22107 32294241 ~ 32295566 (+) True LOC117596937
LOC117596959 other downstream 63954 32336088 ~ 32336582 (+) True LOC117596959

Expression Profile