RNA id: LOC117597129


Basic Information

Item Value
RNA id LOC117597129
length 510
RNA type V_segment
GC content 0.42
exon number 3
gene id LOC117597129
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32362641 ~ 32364748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaactACAAACCCAGCAGTACTGCAACAAACAACTACCTGAactggtacagacaatatccagaatctaaacctgagttccttctttatatttatcaaactggagctctgagtcccaaCAGAcccccaagaatgtctgctGAAGTTGatgataataaagataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtTTAGAATATAGCTTTGTGTTGACTGTTGACAGCTGGGTCGCCTGGGTGAGGGTGTCTGATGATCCAAGTCCTGAAACACCCTATGACCCCGAGTtcatcactgatgatgtgtccaAGTCGCACCATCTGGTGTTTCAACAAACaagaaactataaaataaatgattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88396 lncRNA upstream 22567 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 66107 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 154817 32207361 ~ 32207824 (+) True G74573
XR_004577980.1 lncRNA upstream 499484 31859960 ~ 31863157 (+) True LOC117597031
XR_004577915.1 lncRNA downstream 168098 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 324678 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 342345 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 373355 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 532056 32896804 ~ 32924735 (+) True G74672
XM_034303860.1 mRNA upstream 42734 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 257350 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 769607 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 772303 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 809726 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 809726 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 809726 33174474 ~ 33249659 (+) False chd8
LOC117596942 other upstream 6056 32355996 ~ 32356585 (+) True LOC117596942
LOC117596931 other upstream 21230 32340495 ~ 32341411 (+) True LOC117596931
LOC117596952 other upstream 23830 32338311 ~ 32338811 (+) True LOC117596952
LOC117596959 other upstream 26059 32336088 ~ 32336582 (+) True LOC117596959
LOC117596937 other upstream 67075 32294241 ~ 32295566 (+) True LOC117596937
LOC117597130 other downstream 3131 32367879 ~ 32369140 (+) True LOC117597130
LOC117596935 other downstream 5111 32369859 ~ 32370818 (+) True LOC117596935
LOC117596960 other downstream 14675 32379423 ~ 32379917 (+) True LOC117596960
LOC117596953 other downstream 32158 32396906 ~ 32397397 (+) True LOC117596953
LOC117597131 other downstream 39800 32404548 ~ 32405101 (+) True LOC117597131

Expression Profile