Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117597130 |
| length | 326 |
| RNA type | V_segment |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC117597130 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32367879 ~ 32369140 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0044459 | obsolete plasma membrane part | cellular_component |
| id | description |
|---|---|
| ko04612 | Antigen processing and presentation |
| ko04672 | Intestinal immune network for IgA production |
| ko05323 | Rheumatoid arthritis |
| ko05320 | Autoimmune thyroid disease |
| ko05330 | Allograft rejection |
| ko05332 | Graft-versus-host disease |
| ko05416 | Viral myocarditis |
| ko04940 | Type I diabetes mellitus |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88396 | lncRNA | upstream | 27805 | 32318432 ~ 32340074 (+) | True | G74580 |
| TU88394 | lncRNA | upstream | 71345 | 32284208 ~ 32296534 (+) | True | G74578 |
| TU88389 | lncRNA | upstream | 160055 | 32207361 ~ 32207824 (+) | True | G74573 |
| XR_004577980.1 | lncRNA | upstream | 504722 | 31859960 ~ 31863157 (+) | True | LOC117597031 |
| XR_004577915.1 | lncRNA | downstream | 163706 | 32532846 ~ 32533606 (+) | True | LOC117596964 |
| XR_004577916.1 | lncRNA | downstream | 320286 | 32689426 ~ 32690023 (+) | True | LOC117596965 |
| TU88477 | lncRNA | downstream | 337953 | 32707093 ~ 32707498 (+) | True | G74655 |
| XR_004577921.1 | lncRNA | downstream | 368963 | 32738103 ~ 32740111 (+) | True | LOC117596969 |
| TU88495 | lncRNA | downstream | 527664 | 32896804 ~ 32924735 (+) | True | G74672 |
| XM_034303860.1 | mRNA | upstream | 47972 | 32316988 ~ 32319907 (+) | True | LOC117597128 |
| XM_026936383.2 | mRNA | upstream | 262588 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
| XM_034303675.1 | mRNA | downstream | 765215 | 33134355 ~ 33148431 (+) | False | mmp14b |
| XM_026912173.2 | mRNA | downstream | 767911 | 33137051 ~ 33148431 (+) | False | mmp14b |
| XM_034304145.1 | mRNA | downstream | 805334 | 33174474 ~ 33249659 (+) | True | chd8 |
| XM_034304147.1 | mRNA | downstream | 805334 | 33174474 ~ 33249659 (+) | False | chd8 |
| XM_034304146.1 | mRNA | downstream | 805334 | 33174474 ~ 33249659 (+) | False | chd8 |
| LOC117597129 | other | upstream | 3131 | 32362641 ~ 32364748 (+) | True | LOC117597129 |
| LOC117596942 | other | upstream | 11294 | 32355996 ~ 32356585 (+) | True | LOC117596942 |
| LOC117596931 | other | upstream | 26468 | 32340495 ~ 32341411 (+) | True | LOC117596931 |
| LOC117596952 | other | upstream | 29068 | 32338311 ~ 32338811 (+) | True | LOC117596952 |
| LOC117596959 | other | upstream | 31297 | 32336088 ~ 32336582 (+) | True | LOC117596959 |
| LOC117596935 | other | downstream | 719 | 32369859 ~ 32370818 (+) | True | LOC117596935 |
| LOC117596960 | other | downstream | 10283 | 32379423 ~ 32379917 (+) | True | LOC117596960 |
| LOC117596953 | other | downstream | 27766 | 32396906 ~ 32397397 (+) | True | LOC117596953 |
| LOC117597131 | other | downstream | 35408 | 32404548 ~ 32405101 (+) | True | LOC117597131 |
| LOC117596954 | other | downstream | 107132 | 32476272 ~ 32476763 (+) | True | LOC117596954 |
