RNA id: LOC117597134


Basic Information

Item Value
RNA id LOC117597134
length 510
RNA type V_segment
GC content 0.42
exon number 3
gene id LOC117597134
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32594836 ~ 32596942 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgttaatgttactctgtcctgcaactACAAACCCAGCAGTACTGCAACAAACAACTACCTGAactggtacagacaatatccagaatctaaacctgagttccttctttatatttatcaaactggagctctgagtcccaaCAGAcccccaagaatgtctgctGAAGTTGatgataataaagataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtTTAGAATATAGCTTTGTGTTGACTGTTGACAGCTGGGTCGCCTGGGTGAGGGTGTCTGATGATCCAAGTCCTGAAACACCCTATGACCCCGGTtcatcactgatgatgtgtccaAGTCGCACCCATCTGGTGTTTCAACAAACaagaaactataaaataaatgattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577915.1 lncRNA upstream 61230 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 254762 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 298302 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 387012 32207361 ~ 32207824 (+) True G74573
XR_004577981.1 lncRNA upstream 731679 31859960 ~ 31863157 (+) False LOC117597031
XR_004577916.1 lncRNA downstream 92484 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 110151 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 141161 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 299862 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 318598 32915540 ~ 32915973 (+) True G74676
XM_034303860.1 mRNA upstream 274929 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 489545 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 537413 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 540109 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 577532 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 577532 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 577532 33174474 ~ 33249659 (+) False chd8
LOC117596941 other upstream 8170 32586071 ~ 32586666 (+) True LOC117596941
TU88419 other upstream 8246 32586072 ~ 32586590 (+) False LOC117596941
LOC117596955 other upstream 34067 32560263 ~ 32560769 (+) True LOC117596955
LOC117597133 other upstream 41532 32542925 ~ 32553304 (+) True LOC117597133
LOC117597132 other upstream 67176 32524877 ~ 32527660 (+) True LOC117597132
TU88470 other downstream 91375 32688317 ~ 32688797 (+) True G74651
XR_004577917.1 other downstream 92484 32689426 ~ 32690032 (+) False LOC117596965
LOC117596958 other downstream 96661 32693603 ~ 32694103 (+) True LOC117596958
LOC117597136 other downstream 102835 32699777 ~ 32714861 (+) True LOC117597136
TU88479 other downstream 116231 32713173 ~ 32720432 (+) False LOC117596949

Expression Profile