RNA id: LOC117597136


Basic Information

Item Value
RNA id LOC117597136
length 655
RNA type V_segment
GC content 0.43
exon number 3
gene id LOC117597136
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32699777 ~ 32714861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacaTGTAGAGACATCAGAGACAATCTCAAATATACAACActggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGcagAGGCTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGTATCAGCTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTCTTGAAGCTACAGAAACTGTCACTAAAGCTGAACACCTTGACCCAAGACTATCCACCAGACTccataaaaaggaaaagaaagtagATCTGGAGATCTTTCCTGCTGcagtatcagactctgcactgtactactgcgccctgcaGATCCTGCAGCTGATCCAGTTGAGCTGGAATGAGGCAAGTCTTCTGGGGTTGTGGAAAGCCAGAGCACTTGACTACGCCTAA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577916.1 lncRNA upstream 9754 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 166171 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 359703 32318432 ~ 32340074 (+) True G74580
TU88394 lncRNA upstream 403243 32284208 ~ 32296534 (+) True G74578
TU88389 lncRNA upstream 491953 32207361 ~ 32207824 (+) True G74573
XR_004577921.1 lncRNA downstream 23242 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 181943 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 200679 32915540 ~ 32915973 (+) True G74676
TU88509 lncRNA downstream 309115 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 410807 33125668 ~ 33125884 (+) True G74747
XM_034303860.1 mRNA upstream 379870 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 594486 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 419494 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 422190 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 459613 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 459613 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 459613 33174474 ~ 33249659 (+) False chd8
LOC117596958 other upstream 5674 32693603 ~ 32694103 (+) True LOC117596958
XR_004577917.1 other upstream 9745 32689426 ~ 32690032 (+) False LOC117596965
TU88470 other upstream 10980 32688317 ~ 32688797 (+) True G74651
LOC117597134 other upstream 102835 32594836 ~ 32596942 (+) True LOC117597134
LOC117596941 other upstream 113111 32586071 ~ 32586666 (+) True LOC117596941
LOC117596943 other downstream 93 32714954 ~ 32715523 (+) True LOC117596943
TU88480 other downstream 5095 32719956 ~ 32720432 (+) False LOC117596949
LOC117596949 other downstream 5103 32719964 ~ 32720464 (+) True LOC117596949
LOC117597137 other downstream 6963 32721824 ~ 32736271 (+) True LOC117597137
TU88484 other downstream 27404 32742265 ~ 32742970 (+) True LOC117596925

Expression Profile