RNA id: LOC117597138


Basic Information

Item Value
RNA id LOC117597138
length 1063
RNA type V_segment
GC content 0.36
exon number 4
gene id LOC117597138
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32745500 ~ 32747793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAAGCCATTAAAAGCAGCCACACCACTCCCAGTAGCAACCTTCTTAACCCTTTCAGGCACAGTGGCTGCTTAAAAGTGGGAGGAGCTAGATGTGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTTACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTATTATATCTTCAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTCCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGCAGCCCACAGtaacaggaaacacaactacacagtacaaaaactccttcacatcacaaaagggaggtttttctttttctcaggagGGGGAGCTGTTTGGCTTTTTGATTCAAATAAATTTTGCTTTTTCAATTTCCAGTCTTTGATGTTGGAATAACTTTGAATATCTATGCTGATTGTGCTAGAATAATCTCCATAGAAAATGTTAATCACCTTTCTGGATATtaagaaattttattatttcataaatgtaatTCTCATGCATCaggtctgttttattatttaaaccgAAAAACCCAAAATGTCCCAACAAATGTAGCTGTTATTTGTGGACAGaatttgtttagaaaaatatatgtttaagtGAAATGTTGTGAGTTGAATaagattgtgtttatttattagagcaACTACATATCATGAAGAATATTTCACATCTATTCatgctaaaatgtgtttaaataaaaaagggtCTTTACATTAGAATATGTTGttattgtataaaattaaaatcctaCTCAGTAAACATTACCTCTTCaggtaaataataaagataaatccactttaaatgcatttaaatagacTGTAGAGAGTTATggaagtgttgtgttttttaaagatcaGAATGGTGTGGGAACTGAATCGCTTTTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577921.1 lncRNA upstream 5389 32738103 ~ 32740111 (+) True LOC117596969
TU88477 lncRNA upstream 38002 32707093 ~ 32707498 (+) True G74655
XR_004577916.1 lncRNA upstream 55477 32689426 ~ 32690023 (+) True LOC117596965
XR_004577915.1 lncRNA upstream 211894 32532846 ~ 32533606 (+) True LOC117596964
TU88396 lncRNA upstream 405426 32318432 ~ 32340074 (+) True G74580
TU88495 lncRNA downstream 149011 32896804 ~ 32924735 (+) True G74672
TU88499 lncRNA downstream 167747 32915540 ~ 32915973 (+) True G74676
TU88509 lncRNA downstream 276183 33023976 ~ 33024331 (+) True G74686
TU88574 lncRNA downstream 377875 33125668 ~ 33125884 (+) True G74747
TU88585 lncRNA downstream 382250 33130043 ~ 33135759 (+) True mmp14b
XM_034303860.1 mRNA upstream 425593 32316988 ~ 32319907 (+) True LOC117597128
XM_026936383.2 mRNA upstream 640209 32081919 ~ 32105291 (+) False LOC113540131
XM_034303675.1 mRNA downstream 386562 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 389258 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 426681 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 426681 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 426681 33174474 ~ 33249659 (+) False chd8
LOC117596925 other upstream 2363 32742471 ~ 32743137 (+) False LOC117596925
TU88484 other upstream 2530 32742265 ~ 32742970 (+) True LOC117596925
LOC117597137 other upstream 9229 32721824 ~ 32736271 (+) True LOC117597137
LOC117596949 other upstream 25036 32719964 ~ 32720464 (+) True LOC117596949
TU88479 other upstream 25068 32713173 ~ 32720432 (+) False LOC117596949
LOC117596944 other downstream 132918 32880711 ~ 32881365 (+) True LOC117596944
XR_004577922.1 other downstream 178823 32926616 ~ 32927014 (+) True LOC117596970

Expression Profile