RNA id: LOC117597142


Basic Information

Item Value
RNA id LOC117597142
length 422
RNA type V_segment
GC content 0.45
exon number 2
gene id LOC117597142
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32996356 ~ 32996892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactactgCTGATATCGcagAGGCTGCAGACAACAGCATTGAACCAGAAAAACCCTCGAGATCTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTGGAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAATCAGTGGACGTGTCACACAAGCTGAACCACCTCATCCACGATTGTCTATGAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578073.1 lncRNA downstream 49198 32946134 ~ 32947158 (-) True LOC117597171
XR_004577918.1 lncRNA downstream 123333 32871746 ~ 32873023 (-) True LOC117596966
TU88526 lncRNA downstream 133697 32862207 ~ 32862659 (-) True G74702
XR_004577919.1 lncRNA downstream 144981 32849927 ~ 32851375 (-) True LOC117596967
XR_004577920.1 lncRNA downstream 227074 32767588 ~ 32769282 (-) True LOC117596968
TU88542 lncRNA upstream 28529 33025421 ~ 33025846 (-) True G74717
TU88545 lncRNA upstream 34150 33031042 ~ 33031426 (-) True G74720
TU88554 lncRNA upstream 61068 33057960 ~ 33058362 (-) False LOC117597193
TU88557 lncRNA upstream 85647 33082539 ~ 33082974 (-) False LOC117597189
TU88558 lncRNA upstream 87506 33084398 ~ 33084836 (-) True G74731
XM_034303864.1 mRNA downstream 18656 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 170789 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1268804 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1451722 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1463098 31528370 ~ 31533258 (-) True psmb5
XM_026912180.2 mRNA upstream 134195 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 134195 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 134195 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 169050 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 169050 33165942 ~ 33168020 (-) True cbln12
LOC117597177 other downstream 24843 32971004 ~ 32971513 (-) True LOC117597177
LOC117597170 other downstream 45862 32949834 ~ 32950494 (-) True LOC117597170
TU88533 other downstream 49556 32946181 ~ 32946800 (-) False LOC117597171
TU88528 other downstream 127890 32865946 ~ 32868466 (-) False G74703
TU88527 other downstream 129895 32865946 ~ 32866461 (-) True G74703
LOC117597007 other upstream 36126 33033018 ~ 33033661 (-) True LOC117597007
TU88550 other upstream 38011 33034903 ~ 33042101 (-) True LOC117597009
LOC117597009 other upstream 38012 33034904 ~ 33035413 (-) False LOC117597009
LOC117597008 other upstream 40169 33037061 ~ 33037706 (-) True LOC117597008
LOC117597193 other upstream 60606 33057498 ~ 33058351 (-) True LOC117597193

Expression Profile