Item | Value |
---|---|
RNA id | LOC117597173 |
length | 482 |
RNA type | V_segment |
GC content | 0.45 |
exon number | 2 |
gene id | LOC117597173 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047598.1 |
NCBI id | CM018544.1 |
chromosome length | 33267568 |
location | 31959022 ~ 32330845 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
XR_004577980.1 | lncRNA | upstream | 95865 | 31859960 ~ 31863157 (+) | True | LOC117597031 |
XR_004577981.1 | lncRNA | upstream | 95865 | 31859960 ~ 31863157 (+) | False | LOC117597031 |
TU88141 | lncRNA | upstream | 111156 | 31822525 ~ 31847866 (+) | False | LOC113540254 |
TU88150 | lncRNA | upstream | 111272 | 31809876 ~ 31847750 (+) | False | LOC113540254 |
TU88389 | lncRNA | downstream | 247694 | 32207361 ~ 32207824 (+) | True | G74573 |
TU88394 | lncRNA | downstream | 324541 | 32284208 ~ 32296534 (+) | True | G74578 |
TU88396 | lncRNA | downstream | 358765 | 32318432 ~ 32340074 (+) | True | G74580 |
XR_004577915.1 | lncRNA | downstream | 573179 | 32532846 ~ 32533606 (+) | True | LOC117596964 |
XR_004577916.1 | lncRNA | downstream | 729759 | 32689426 ~ 32690023 (+) | True | LOC117596965 |
XM_034304128.1 | mRNA | upstream | 182224 | 31759889 ~ 31776798 (+) | False | LOC113540067 |
XM_034304129.1 | mRNA | upstream | 182224 | 31769827 ~ 31776798 (+) | False | LOC113540067 |
XM_034303620.1 | mRNA | upstream | 205355 | 31732612 ~ 31753667 (+) | True | smg7 |
XM_034303622.1 | mRNA | upstream | 205355 | 31732613 ~ 31753667 (+) | False | smg7 |
XM_034303858.1 | mRNA | upstream | 252753 | 31690175 ~ 31706269 (+) | True | lamc2 |
XM_026936384.2 | mRNA | downstream | 122252 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
XM_026936385.2 | mRNA | downstream | 122252 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
XM_026936383.2 | mRNA | downstream | 122252 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
XM_034303207.1 | mRNA | downstream | 122252 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
XM_034303208.1 | mRNA | downstream | 122252 | 32081919 ~ 32105291 (+) | False | LOC113540131 |
LOC117597174 | other | upstream | 12480 | 31946048 ~ 31946542 (+) | True | LOC117597174 |
XR_004578111.1 | other | upstream | 182224 | 31769822 ~ 31776798 (+) | True | LOC113540067 |
TU87898 | other | upstream | 605878 | 31351261 ~ 31353144 (+) | False | c4h22orf39 |
TU87706 | other | upstream | 861134 | 31061730 ~ 31097888 (+) | False | spsb4a |
TU87615 | other | upstream | 1191890 | 30746131 ~ 30767132 (+) | True | G73944 |
LOC117597122 | other | downstream | 1202 | 31960869 ~ 31965136 (+) | True | LOC117597122 |
LOC117596936 | other | downstream | 7532 | 31967199 ~ 31967957 (+) | True | LOC117596936 |
LOC117597123 | other | downstream | 11267 | 31970934 ~ 31972279 (+) | True | LOC117597123 |
LOC117597124 | other | downstream | 14673 | 31974340 ~ 31975068 (+) | True | LOC117597124 |
TU88369 | other | downstream | 27728 | 31987395 ~ 32043153 (+) | False | LOC117596940 |