RNA id: TU88365


Basic Information

Item Value
RNA id TU88365
length 454
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC117597173
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31959022 ~ 32330845 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAAGAGAGACACTCACAACAACCATGTTactcttcctctctgttttcATAGCTCTTACTGATGTTGcagaggCTGTAGATGAGCTCATTAAACCAGACCAAACCATCATACCTTCACGTGAAGGCAGCAGCaccacactgacctgcacataTGATGACTCGGCTCTCTATCTCCACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGATGATTCAAAAGTCCACAGAAGCTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTGCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGtaacaggaaacacaactacactgtacaaaaactccttcacatcacaaaagggaggtttttctttttctcaggagGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577980.1 lncRNA upstream 95885 31859960 ~ 31863157 (+) True LOC117597031
XR_004577981.1 lncRNA upstream 95885 31859960 ~ 31863157 (+) False LOC117597031
TU88141 lncRNA upstream 111176 31822525 ~ 31847866 (+) False LOC113540254
TU88150 lncRNA upstream 111292 31809876 ~ 31847750 (+) False LOC113540254
XR_004577915.1 lncRNA downstream 202001 32532846 ~ 32533606 (+) True LOC117596964
XR_004577916.1 lncRNA downstream 358581 32689426 ~ 32690023 (+) True LOC117596965
TU88477 lncRNA downstream 376248 32707093 ~ 32707498 (+) True G74655
XR_004577921.1 lncRNA downstream 407258 32738103 ~ 32740111 (+) True LOC117596969
TU88495 lncRNA downstream 565959 32896804 ~ 32924735 (+) True G74672
XM_034304128.1 mRNA upstream 182244 31759889 ~ 31776798 (+) False LOC113540067
XM_034304129.1 mRNA upstream 182244 31769827 ~ 31776798 (+) False LOC113540067
XM_034303620.1 mRNA upstream 205375 31732612 ~ 31753667 (+) True smg7
XM_034303622.1 mRNA upstream 205375 31732613 ~ 31753667 (+) False smg7
XM_034303858.1 mRNA upstream 252773 31690175 ~ 31706269 (+) True lamc2
XM_034303675.1 mRNA downstream 803510 33134355 ~ 33148431 (+) False mmp14b
XM_026912173.2 mRNA downstream 806206 33137051 ~ 33148431 (+) False mmp14b
XM_034304145.1 mRNA downstream 843629 33174474 ~ 33249659 (+) True chd8
XM_034304147.1 mRNA downstream 843629 33174474 ~ 33249659 (+) False chd8
XM_034304146.1 mRNA downstream 843629 33174474 ~ 33249659 (+) False chd8
LOC117597174 other upstream 12500 31946048 ~ 31946542 (+) True LOC117597174
XR_004578111.1 other upstream 182244 31769822 ~ 31776798 (+) True LOC113540067
TU87898 other upstream 605898 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 861154 31061730 ~ 31097888 (+) False spsb4a
TU87616 other upstream 1191910 30746131 ~ 30767132 (+) False G73944
LOC117596959 other downstream 5243 32336088 ~ 32336582 (+) True LOC117596959
LOC117596952 other downstream 7466 32338311 ~ 32338811 (+) True LOC117596952
LOC117596931 other downstream 9650 32340495 ~ 32341411 (+) True LOC117596931
LOC117596942 other downstream 25151 32355996 ~ 32356585 (+) True LOC117596942
LOC117597129 other downstream 31796 32362641 ~ 32364748 (+) True LOC117597129

Expression Profile