Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU88557 |
| length | 272 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 2 |
| gene id | LOC117597189 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 33082197 ~ 33083322 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88554 | lncRNA | downstream | 24177 | 33057960 ~ 33058362 (-) | False | LOC117597193 |
| TU88545 | lncRNA | downstream | 51113 | 33031042 ~ 33031426 (-) | True | G74720 |
| TU88542 | lncRNA | downstream | 56693 | 33025421 ~ 33025846 (-) | True | G74717 |
| XR_004578073.1 | lncRNA | downstream | 135381 | 32946134 ~ 32947158 (-) | True | LOC117597171 |
| XR_004577918.1 | lncRNA | downstream | 209516 | 32871746 ~ 32873023 (-) | True | LOC117596966 |
| TU88558 | lncRNA | upstream | 1424 | 33084398 ~ 33084836 (-) | True | G74731 |
| XR_004577944.1 | lncRNA | upstream | 7232 | 33090206 ~ 33091128 (-) | True | LOC117596990 |
| TU88563 | lncRNA | upstream | 25155 | 33108129 ~ 33108638 (-) | True | G74736 |
| TU88564 | lncRNA | upstream | 31770 | 33114744 ~ 33114997 (-) | True | G74737 |
| TU88571 | lncRNA | upstream | 39618 | 33122592 ~ 33122959 (-) | True | G74744 |
| XM_034303864.1 | mRNA | downstream | 104839 | 32972785 ~ 32977700 (-) | True | LOC117597141 |
| XM_034303863.1 | mRNA | downstream | 256972 | 32823558 ~ 32825567 (-) | True | LOC117597140 |
| XM_026935889.2 | mRNA | downstream | 1354987 | 31710064 ~ 31727552 (-) | True | nmnat2 |
| XM_034303857.1 | mRNA | downstream | 1537905 | 31538539 ~ 31544634 (-) | True | LOC113540064 |
| XM_026936953.2 | mRNA | downstream | 1549281 | 31528370 ~ 31533258 (-) | True | psmb5 |
| XM_026912180.2 | mRNA | upstream | 48113 | 33131087 ~ 33135775 (-) | False | c4h14orf119 |
| XM_026912181.2 | mRNA | upstream | 48113 | 33131087 ~ 33135467 (-) | False | c4h14orf119 |
| XM_026912179.2 | mRNA | upstream | 48113 | 33131087 ~ 33134319 (-) | True | c4h14orf119 |
| XM_026912175.2 | mRNA | upstream | 82968 | 33165942 ~ 33168027 (-) | False | cbln12 |
| XM_026912176.2 | mRNA | upstream | 82968 | 33165942 ~ 33168020 (-) | True | cbln12 |
| LOC117597193 | other | downstream | 24188 | 33057498 ~ 33058351 (-) | True | LOC117597193 |
| TU88550 | other | downstream | 40438 | 33034903 ~ 33042101 (-) | True | LOC117597009 |
| LOC117597008 | other | downstream | 44833 | 33037061 ~ 33037706 (-) | True | LOC117597008 |
| LOC117597009 | other | downstream | 47126 | 33034904 ~ 33035413 (-) | False | LOC117597009 |
| LOC117597007 | other | downstream | 48878 | 33033018 ~ 33033661 (-) | True | LOC117597007 |
| XR_004577945.1 | other | upstream | 7232 | 33090206 ~ 33091128 (-) | False | LOC117596990 |
| LOC117597195 | other | upstream | 15777 | 33098751 ~ 33099488 (-) | True | LOC117597195 |
| LOC117597204 | other | upstream | 18160 | 33101134 ~ 33101640 (-) | True | LOC117597204 |
| LOC117597199 | other | upstream | 26844 | 33109818 ~ 33110318 (-) | True | LOC117597199 |
| LOC117597144 | other | upstream | 37818 | 33120792 ~ 33125120 (-) | False | LOC117597144 |
