RNA id: LOC117597193


Basic Information

Item Value
RNA id LOC117597193
length 703
RNA type V_segment
GC content 0.38
exon number 2
gene id LOC117597193
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33057498 ~ 33058362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACTGCCGTTTATATCTACTGCAAGAGAGACACTCACAACAATCATGTTcctcttctttgttttcataGCTGTTAAAAACATTGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTTTTATATCTTCAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCACCAGACTCCGTAAAAATGAGAGGAAAGTATATCTGGAGATCTTTCCTGCTTCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGtaacaggaaacacaactacactgtacaaaaactccttcacatcacaaaagggaggtttttctttttctcaggagGGGGAGCTGTTTGGCTTTTTGATTCAAATAAATTTTCCTTTTCCAATTTCCAGTCTTTGATGTTGGAATAACTTTGAATATCTATGCTGATTGTGCTAGAATAATCTCCATAGAAAATGTTAAATCACCATTCTGGATATtaagaaattttattatttcataaatttaaTTCTCATGCATCaggtctgttttattatttaaacccaaaaccCAAAATGTCCCAACAAATGTAGCTGTT

Function

GO: NA

KEGG:

id description
K06553 VPREB, CD179a; pre-B lymphocyte gene

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88545 lncRNA downstream 26072 33031042 ~ 33031426 (-) True G74720
TU88542 lncRNA downstream 31652 33025421 ~ 33025846 (-) True G74717
XR_004578073.1 lncRNA downstream 110340 32946134 ~ 32947158 (-) True LOC117597171
XR_004577918.1 lncRNA downstream 184475 32871746 ~ 32873023 (-) True LOC117596966
TU88526 lncRNA downstream 194839 32862207 ~ 32862659 (-) True G74702
TU88557 lncRNA upstream 24188 33082539 ~ 33082974 (-) False LOC117597189
TU88558 lncRNA upstream 26047 33084398 ~ 33084836 (-) True G74731
XR_004577944.1 lncRNA upstream 31855 33090206 ~ 33091128 (-) True LOC117596990
TU88563 lncRNA upstream 49778 33108129 ~ 33108638 (-) True G74736
TU88564 lncRNA upstream 56393 33114744 ~ 33114997 (-) True G74737
XM_034303864.1 mRNA downstream 79798 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 231931 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1329946 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1512864 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1524240 31528370 ~ 31533258 (-) True psmb5
XM_026912180.2 mRNA upstream 72736 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 72736 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 72736 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 107591 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 107591 33165942 ~ 33168020 (-) True cbln12
TU88550 other downstream 15397 33034903 ~ 33042101 (-) True LOC117597009
LOC117597008 other downstream 19792 33037061 ~ 33037706 (-) True LOC117597008
LOC117597009 other downstream 22085 33034904 ~ 33035413 (-) False LOC117597009
LOC117597007 other downstream 23837 33033018 ~ 33033661 (-) True LOC117597007
LOC117597142 other downstream 60606 32996356 ~ 32996892 (-) True LOC117597142
LOC117597189 other upstream 23846 33082197 ~ 33083322 (-) True LOC117597189
XR_004577945.1 other upstream 31855 33090206 ~ 33091128 (-) False LOC117596990
LOC117597195 other upstream 40400 33098751 ~ 33099488 (-) True LOC117597195
LOC117597204 other upstream 42783 33101134 ~ 33101640 (-) True LOC117597204
LOC117597199 other upstream 51467 33109818 ~ 33110318 (-) True LOC117597199

Expression Profile