Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU88554 |
| length | 255 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 2 |
| gene id | LOC117597193 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 33057498 ~ 33058362 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU88545 | lncRNA | downstream | 26534 | 33031042 ~ 33031426 (-) | True | G74720 |
| TU88542 | lncRNA | downstream | 32114 | 33025421 ~ 33025846 (-) | True | G74717 |
| XR_004578073.1 | lncRNA | downstream | 110802 | 32946134 ~ 32947158 (-) | True | LOC117597171 |
| XR_004577918.1 | lncRNA | downstream | 184937 | 32871746 ~ 32873023 (-) | True | LOC117596966 |
| TU88526 | lncRNA | downstream | 195301 | 32862207 ~ 32862659 (-) | True | G74702 |
| TU88557 | lncRNA | upstream | 24177 | 33082539 ~ 33082974 (-) | False | LOC117597189 |
| TU88558 | lncRNA | upstream | 26036 | 33084398 ~ 33084836 (-) | True | G74731 |
| XR_004577944.1 | lncRNA | upstream | 31844 | 33090206 ~ 33091128 (-) | True | LOC117596990 |
| TU88563 | lncRNA | upstream | 49767 | 33108129 ~ 33108638 (-) | True | G74736 |
| TU88564 | lncRNA | upstream | 56382 | 33114744 ~ 33114997 (-) | True | G74737 |
| XM_034303864.1 | mRNA | downstream | 80260 | 32972785 ~ 32977700 (-) | True | LOC117597141 |
| XM_034303863.1 | mRNA | downstream | 232393 | 32823558 ~ 32825567 (-) | True | LOC117597140 |
| XM_026935889.2 | mRNA | downstream | 1330408 | 31710064 ~ 31727552 (-) | True | nmnat2 |
| XM_034303857.1 | mRNA | downstream | 1513326 | 31538539 ~ 31544634 (-) | True | LOC113540064 |
| XM_026936953.2 | mRNA | downstream | 1524702 | 31528370 ~ 31533258 (-) | True | psmb5 |
| XM_026912180.2 | mRNA | upstream | 72725 | 33131087 ~ 33135775 (-) | False | c4h14orf119 |
| XM_026912181.2 | mRNA | upstream | 72725 | 33131087 ~ 33135467 (-) | False | c4h14orf119 |
| XM_026912179.2 | mRNA | upstream | 72725 | 33131087 ~ 33134319 (-) | True | c4h14orf119 |
| XM_026912175.2 | mRNA | upstream | 107580 | 33165942 ~ 33168027 (-) | False | cbln12 |
| XM_026912176.2 | mRNA | upstream | 107580 | 33165942 ~ 33168020 (-) | True | cbln12 |
| TU88550 | other | downstream | 15859 | 33034903 ~ 33042101 (-) | True | LOC117597009 |
| LOC117597008 | other | downstream | 20254 | 33037061 ~ 33037706 (-) | True | LOC117597008 |
| LOC117597009 | other | downstream | 22547 | 33034904 ~ 33035413 (-) | False | LOC117597009 |
| LOC117597007 | other | downstream | 24299 | 33033018 ~ 33033661 (-) | True | LOC117597007 |
| LOC117597142 | other | downstream | 61068 | 32996356 ~ 32996892 (-) | True | LOC117597142 |
| LOC117597189 | other | upstream | 23835 | 33082197 ~ 33083322 (-) | True | LOC117597189 |
| XR_004577945.1 | other | upstream | 31844 | 33090206 ~ 33091128 (-) | False | LOC117596990 |
| LOC117597195 | other | upstream | 40389 | 33098751 ~ 33099488 (-) | True | LOC117597195 |
| LOC117597204 | other | upstream | 42772 | 33101134 ~ 33101640 (-) | True | LOC117597204 |
| LOC117597199 | other | upstream | 51456 | 33109818 ~ 33110318 (-) | True | LOC117597199 |
