RNA id: LOC117597199


Basic Information

Item Value
RNA id LOC117597199
length 336
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC117597199
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33109818 ~ 33110318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcatgaagttgtagatgaaggtgttaatgttactctgtcctgcagctACAAAAAAATCAGTGCTACCGTAAACAACCTGcactggtacagacaatatccaaaatctaaacctgagttccttctgTACATCACTCCAAGTGGATTTCAAAGTGATCCTATTTCACCACGTCTGTCTGCTAAAGTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88563 lncRNA downstream 1180 33108129 ~ 33108638 (-) True G74736
XR_004577944.1 lncRNA downstream 18690 33090206 ~ 33091128 (-) True LOC117596990
TU88558 lncRNA downstream 24982 33084398 ~ 33084836 (-) True G74731
TU88557 lncRNA downstream 26844 33082539 ~ 33082974 (-) False LOC117597189
TU88554 lncRNA downstream 51456 33057960 ~ 33058362 (-) False LOC117597193
TU88564 lncRNA upstream 4426 33114744 ~ 33114997 (-) True G74737
TU88571 lncRNA upstream 12274 33122592 ~ 33122959 (-) True G74744
TU88575 lncRNA upstream 15349 33125667 ~ 33125874 (-) True G74748
XM_034303864.1 mRNA downstream 132118 32972785 ~ 32977700 (-) True LOC117597141
XM_034303863.1 mRNA downstream 284251 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1382266 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1565184 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1576560 31528370 ~ 31533258 (-) True psmb5
XM_026912180.2 mRNA upstream 20769 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 20769 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 20769 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 55624 33165942 ~ 33168027 (-) False cbln12
XM_026912176.2 mRNA upstream 55624 33165942 ~ 33168020 (-) True cbln12
LOC117597204 other downstream 8178 33101134 ~ 33101640 (-) True LOC117597204
LOC117597195 other downstream 10330 33098751 ~ 33099488 (-) True LOC117597195
XR_004577945.1 other downstream 18690 33090206 ~ 33091128 (-) False LOC117596990
LOC117597189 other downstream 26496 33082197 ~ 33083322 (-) True LOC117597189
LOC117597193 other downstream 51467 33057498 ~ 33058351 (-) True LOC117597193
LOC117597144 other upstream 10474 33120792 ~ 33125120 (-) False LOC117597144
TU88570 other upstream 10781 33121099 ~ 33121407 (-) False LOC117597144
TU88573 other upstream 14315 33124633 ~ 33125144 (-) True LOC117597144

Expression Profile