Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117597204 |
| length | 342 |
| RNA type | V_segment |
| GC content | 0.43 |
| exon number | 2 |
| gene id | LOC117597204 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 33101134 ~ 33101640 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko05168 | Herpes simplex virus 1 infection |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577944.1 | lncRNA | downstream | 10006 | 33090206 ~ 33091128 (-) | True | LOC117596990 |
| TU88558 | lncRNA | downstream | 16298 | 33084398 ~ 33084836 (-) | True | G74731 |
| TU88557 | lncRNA | downstream | 18160 | 33082539 ~ 33082974 (-) | False | LOC117597189 |
| TU88554 | lncRNA | downstream | 42772 | 33057960 ~ 33058362 (-) | False | LOC117597193 |
| TU88545 | lncRNA | downstream | 69708 | 33031042 ~ 33031426 (-) | True | G74720 |
| TU88563 | lncRNA | upstream | 6489 | 33108129 ~ 33108638 (-) | True | G74736 |
| TU88564 | lncRNA | upstream | 13104 | 33114744 ~ 33114997 (-) | True | G74737 |
| TU88571 | lncRNA | upstream | 20952 | 33122592 ~ 33122959 (-) | True | G74744 |
| TU88575 | lncRNA | upstream | 24027 | 33125667 ~ 33125874 (-) | True | G74748 |
| XM_034303864.1 | mRNA | downstream | 123434 | 32972785 ~ 32977700 (-) | True | LOC117597141 |
| XM_034303863.1 | mRNA | downstream | 275567 | 32823558 ~ 32825567 (-) | True | LOC117597140 |
| XM_026935889.2 | mRNA | downstream | 1373582 | 31710064 ~ 31727552 (-) | True | nmnat2 |
| XM_034303857.1 | mRNA | downstream | 1556500 | 31538539 ~ 31544634 (-) | True | LOC113540064 |
| XM_026936953.2 | mRNA | downstream | 1567876 | 31528370 ~ 31533258 (-) | True | psmb5 |
| XM_026912180.2 | mRNA | upstream | 29447 | 33131087 ~ 33135775 (-) | False | c4h14orf119 |
| XM_026912181.2 | mRNA | upstream | 29447 | 33131087 ~ 33135467 (-) | False | c4h14orf119 |
| XM_026912179.2 | mRNA | upstream | 29447 | 33131087 ~ 33134319 (-) | True | c4h14orf119 |
| XM_026912175.2 | mRNA | upstream | 64302 | 33165942 ~ 33168027 (-) | False | cbln12 |
| XM_026912176.2 | mRNA | upstream | 64302 | 33165942 ~ 33168020 (-) | True | cbln12 |
| LOC117597195 | other | downstream | 1646 | 33098751 ~ 33099488 (-) | True | LOC117597195 |
| XR_004577945.1 | other | downstream | 10006 | 33090206 ~ 33091128 (-) | False | LOC117596990 |
| LOC117597189 | other | downstream | 17812 | 33082197 ~ 33083322 (-) | True | LOC117597189 |
| LOC117597193 | other | downstream | 42783 | 33057498 ~ 33058351 (-) | True | LOC117597193 |
| LOC117597008 | other | downstream | 63428 | 33037061 ~ 33037706 (-) | True | LOC117597008 |
| LOC117597199 | other | upstream | 8178 | 33109818 ~ 33110318 (-) | True | LOC117597199 |
| LOC117597144 | other | upstream | 19152 | 33120792 ~ 33125120 (-) | False | LOC117597144 |
| TU88570 | other | upstream | 19459 | 33121099 ~ 33121407 (-) | False | LOC117597144 |
| TU88573 | other | upstream | 22993 | 33124633 ~ 33125144 (-) | True | LOC117597144 |
