RNA id: TU68169


Basic Information

Item Value
RNA id TU68169
length 415
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G57716
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 203973 ~ 207155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacgtcaggcgaggaggcctggagtgcagtctgcattccaattcaatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggccactcgatctcttccacaccaaccttcacacaccatgtatTTATAAACCTCTCTTTGtgcatgctggaacaagtttgggccgGTTTGCTCCAGTGAAAAGAAATCTtactgctacagcatacaaagactttctacaaacacaacagtttgaggaaggttCACATTTGGCTGTGACGGTCCGGTGTCCACAggcttttggtcatatagtgtatagtgaatattttttccatgttctgtatttctttttttctaaatatctaCAGTAGAAATGCACGAAGGTCATGTCATGGGTACAGAACTCTCTGCTCTTTAAGAATACATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68156 lncRNA downstream 6307 192687 ~ 197666 (-) True G57711
TU68151 lncRNA downstream 20708 183056 ~ 183265 (-) True G57706
TU67793 lncRNA downstream 26425 177318 ~ 177548 (-) True G57526
TU67761 lncRNA downstream 45206 157913 ~ 158767 (-) True G57502
TU67741 lncRNA downstream 166020 32764 ~ 37953 (-) True G57488
TU68179 lncRNA upstream 6186 213341 ~ 256676 (-) True G57723
TU68183 lncRNA upstream 6186 213341 ~ 256676 (-) False G57723
TU68190 lncRNA upstream 15066 222221 ~ 223031 (-) True G57727
TU68191 lncRNA upstream 15066 222221 ~ 262336 (-) False G57727
TU68164 lncRNA upstream 72827 279982 ~ 282983 (-) False eif2b5
XM_026911767.2 mRNA downstream 19000 177871 ~ 184973 (-) False LOC113525290
XM_034303966.1 mRNA downstream 23693 177871 ~ 180280 (-) False LOC113525290
XM_026911766.2 mRNA downstream 23698 177871 ~ 180275 (-) True LOC113525290
XM_026912109.2 mRNA downstream 95879 99678 ~ 108094 (-) False bcl10
XM_026912108.2 mRNA downstream 95880 99678 ~ 108093 (-) True bcl10
XM_034303964.1 mRNA upstream 55291 262446 ~ 272620 (-) True LOC113525282
XM_026911758.2 mRNA upstream 55291 262446 ~ 266287 (-) False LOC113525282
XM_034303516.1 mRNA upstream 73379 280534 ~ 300017 (-) True eif2b5
XM_034303501.1 mRNA upstream 96528 303683 ~ 321689 (-) True LOC117597016
XM_034303482.1 mRNA upstream 139904 347059 ~ 497563 (-) False LOC117597012
TU67777 other downstream 105856 95428 ~ 98117 (-) False LOC117596995
TU68285 other upstream 83355 290510 ~ 298456 (-) False eif2b5
TU68328 other upstream 241570 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 405088 612243 ~ 614243 (-) True G57830
TU68378 other upstream 476333 683488 ~ 746031 (-) True G57838
TU68254 other upstream 526400 733555 ~ 734771 (-) True G57740

Expression Profile