RNA id: TU68203


Basic Information

Item Value
RNA id TU68203
length 1819
lncRNA type read_through
GC content 0.42
exon number 4
gene id G57733
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 300980 ~ 856952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATCGGGGAGTTTACATCGTCCGCGACACGGAGAATAATGAAGATCTTCATATTTACTCAGTATCAGTGAGAGagagagcgctACCAGTGTGGGCGATTATCCTGATAGTGCTGATGGTTCTTCTGCTTGTTGCGCTGCCTGTGATGATAATCTGCTACCTGAGGAATCGGCGCTGCCAAAGAGATGAATCGTACAGAGGAGCAGCAGTGGAGCAGGAAGACATCAGAGCTGGAATGGCACCATACAAATGAGGGACCTGCCAGAGAACGAAAGCATGTTGGAGCAGGAGGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGATTTATAACTTCATGCAGCATGATTCTGGAGCAAGGAGAGAGCTAAACTCAGATAGGAAGACGGGAATAAATGATTTCTCCATCCCTTTGTTCTTCACAACACCAAAAGAATACGACCTGACTACAGAATCTGCTGGAATCCTCCCTCATACTGTTTGTCAGTTCTAGACCTGACTActgcaagtcttttttttaatccctttatcTGTTACATATCCTCATCAGATCTTCTTATAGGCTTCTCCTGTCATATATTACCTTTGGAGATGATTTCACTGAGCACCACATCATGTACGAAGCCTGGTTTAGATCTCCACACCTGCTTTAATTTCCTgaaatttacatctagatgtgaaATAGCAAAATATAGCCATCACAGGTTTTACCAGCATCACCTTACCTACCTaactgttttattgtaaatgtaaatgatttatatacTGATGAAGTGACGTCTTAAAGTGTACTAAATACTGGTGCCTTTTACATGTTGAAGAGACACggtactttattttaaatacattttaaaagataaaaagcatgaaataCTTTCACTGGTAGAGactacattatcatttctgacTAATGTGAACTAAGTGGACGTTTTCATGGCAGTCTGTTTATACAGGCTCTTTTTCAGTTAATTTCACTGCAAGATGTTCAGTGCACAtgagaagaagtagaagaataACATACTCTATGTGTAGTCTTTTGAGAGGGTTATCTGTAGCATCATTACTAGAGATTGTGAGGGAGGATCTAAGCACACAGAACAGTGTTAGCAGAGATATGCTAGGTGCTGTGATTAGCGTGCACACAAAGCTATTGATGAACATGCAGCAGTGAATTGAGCCTGCATAGAAGTCTACTTCCGTTCCTCTCGCACTCATCAGTGACGCACAGTCGCACTTTGTTATTGCTCGCTCGCAGGGCTACACTCTGCTCATGATTCAACTAGATATTTGAGATTTTGGGGCCagaattcagacacacacatgttccCACTGCTATGATTAGCTAGATATAAAATaccaaagtgctaatttaagacTTCCTGAAGAAGAAGGTGTTTATGGAGGTGCCAGGACAGAGgagagtcttgatgcaggtcttccttgtaccctgagagatggagagagcagttgagcagtgctagaggatcagagggagcgtggtgcagtgtgaggtgtgataagtgctttgaggtagCTGgatgctggtctgtttttggctttgtaggagagcatcagtgttttaaatctgatgcagcagctacaggaagccagtggagggagcctagcattaattaaattaattaattgacaAGCAGAATGTTTAAACAGACTGGCATGAAAATGGCCATTTCATTAAGAGTCAGAAATGGTAGAGTAGTGTAGCTGTATGTACAATAGACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68324 lncRNA downstream 5626 429960 ~ 435673 (-) True G57799
TU68314 lncRNA downstream 11763 427215 ~ 429536 (-) True G57793
XR_004577972.1 lncRNA downstream 15214 421730 ~ 426085 (-) True LOC117597025
TU68274 lncRNA downstream 19990 336270 ~ 421309 (-) True G57760
TU68215 lncRNA downstream 21431 300980 ~ 419868 (-) False G57733
TU68381 lncRNA upstream 23114 734921 ~ 738411 (-) True LOC117597026
XR_004577973.1 lncRNA upstream 26362 738169 ~ 740709 (-) False LOC117597026
TU68382 lncRNA upstream 28212 740019 ~ 740760 (-) False LOC117597026
TU68383 lncRNA upstream 28212 740019 ~ 748267 (-) False LOC117597026
TU68384 lncRNA upstream 39779 751586 ~ 752375 (-) True G57843
XM_034303493.1 mRNA downstream 29090 395440 ~ 412209 (-) True LOC117597013
XM_034303492.1 mRNA downstream 35535 395440 ~ 405764 (-) False LOC117597013
XM_034303495.1 mRNA downstream 35546 395440 ~ 405753 (-) False LOC117597013
XM_034303487.1 mRNA downstream 55456 347059 ~ 385843 (-) False LOC117597012
XM_034303485.1 mRNA downstream 58213 347059 ~ 383086 (-) False LOC117597012
XM_034303498.1 mRNA upstream 136266 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 151571 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 151571 863378 ~ 886350 (-) False dis3l2
XM_034303473.1 mRNA upstream 151571 863378 ~ 886251 (-) True dis3l2
XM_034303352.1 mRNA upstream 213227 925034 ~ 933915 (-) True LOC113524111
TU68285 other downstream 142843 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 343182 95428 ~ 98117 (-) False LOC117596995
TU68254 other upstream 21748 733555 ~ 734771 (-) True G57740
TU68216 other upstream 127625 839432 ~ 856952 (-) False G57733
TU68413 other upstream 329970 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 980519 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1288171 1999978 ~ 2000050 (-) True trnav-cac_1

Expression Profile