RNA id: TU68204


Basic Information

Item Value
RNA id TU68204
length 1593
lncRNA type read_through
GC content 0.40
exon number 2
gene id G57733
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 300980 ~ 856952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCCAAAGAGATGAACTATATTAACTTGTACAGAGGAGCAGCAGTGGAGCAGGAAGATATCAGAGCTGGAATGGTACCTCAGAAATGACTAACCTACGAGAGAACCAAATGCATGTTGGAGCAGGAGGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGATTTATAACTTCATGCAGCATGATTCTGGAGCAAGGAGAGAGCTAAACTCAGATAGGAAGACGGGAATAAATGATTTCTCCATCCCTTTGTTCTTCACAACACCAAAAGAATACGACCTGACTACAGAATCTGCTGGAATCCTCCCTCATACTGTTTGTCAGTTCTAGACCTGACTActgcaagtcttttttttaatccctttatcTGTTACATATCCTCATCAGATCTTCTTATAGGCTTCTCCTGTCATATATTACCTTTGGAGATGATTTCACTGAGCACCACATCATGTACGAAGCCTGGTTTAGATCTCCACACCTGCTTTAATTTCCTgaaatttacatctagatgtgaaATAGCAAAATATAGCCATCACAGGTTTTACCAGCATCACCTTACCTACCTaactgttttattgtaaatgtaaatgatttatatacTGATGAAGTGACGTCTTAAAGTGTACTAAATACTGGTGCCTTTTACATGTTGAAGAGACACggtactttattttaaatacattttaaaagataaaaagcatgaaataCTTTCACTGGTAGAGactacattatcatttctgacTAATGTGAACTAAGTGGACGTTTTCATGGCAGTCTGTTTATACAGGCTCTTTTTCAGTTAATTTCACTGCAAGATGTTCAGTGCACAtgagaagaagtagaagaataACATACTCTATGTGTAGTCTTTTGAGAGGGTTATCTGTAGCATCATTACTAGAGATTGTGAGGGAGGATCTAAGCACACAGAACAGTGTTAGCAGAGATATGCTAGGTGCTGTGATTAGCGTGCACACAAAGCTATTGATGAACATGCAGCAGTGAATTGAGCCTGCATAGAAGTCTACTTCCGTTCCTCTCGCACTCATCAGTGACGCACAGTCGCACTTTGTTATTGCTCGCTCGCAGGGCTACACTCTGCTCATGATTCAACTAGATATTTGAGATTTTGGGGCCagaattcagacacacacatgttccCACTGCTATGATTAGCTAGATATAAAATaccaaagtgctaatttaagacTTCCTGAAGAAGAAGGTGTTTATGGAGGTGCCAGGACAGAGgagagtcttgatgcaggtcttccttgtaccctgagagatggagagagcagttgagcagtgctagaggatcagagggagcgtggtgcagtgtgaggtgtgataagtgctttgaggtagCTGgatgctggtctgtttttggctttgtaggagagcatcagtgttttaaatctgatgcagcagctacaggaagccagtggagggagcctagcattaattaaattaattaattgacaAGCAGAATGTTTAAACAGACTGGCATGAAAATGGCCATTTCATTAAGAGTCAGAAATGGTAGAGTAGTGTAGCTGTATGTACAATAGACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68324 lncRNA downstream 5626 429960 ~ 435673 (-) True G57799
TU68314 lncRNA downstream 11763 427215 ~ 429536 (-) True G57793
XR_004577972.1 lncRNA downstream 15214 421730 ~ 426085 (-) True LOC117597025
TU68274 lncRNA downstream 19990 336270 ~ 421309 (-) True G57760
TU68215 lncRNA downstream 21431 300980 ~ 419868 (-) False G57733
TU68261 lncRNA upstream 9247 452633 ~ 698272 (-) True G57747
TU68333 lncRNA upstream 11456 454842 ~ 501206 (-) True G57805
TU68311 lncRNA upstream 14103 457489 ~ 503881 (-) False G57792
TU68336 lncRNA upstream 27463 470849 ~ 471624 (-) True G57808
TU68239 lncRNA upstream 37534 480920 ~ 514265 (-) False G57733
XM_034303493.1 mRNA downstream 29090 395440 ~ 412209 (-) True LOC117597013
XM_034303492.1 mRNA downstream 35535 395440 ~ 405764 (-) False LOC117597013
XM_034303495.1 mRNA downstream 35546 395440 ~ 405753 (-) False LOC117597013
XM_034303487.1 mRNA downstream 55456 347059 ~ 385843 (-) False LOC117597012
XM_034303485.1 mRNA downstream 58213 347059 ~ 383086 (-) False LOC117597012
XM_034303503.1 mRNA upstream 256663 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 266973 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 266979 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 404687 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 419992 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 142843 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 343182 95428 ~ 98117 (-) False LOC117596995
TU68328 other upstream 5339 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 168857 612243 ~ 614243 (-) True G57830
TU68378 other upstream 240102 683488 ~ 746031 (-) True G57838
TU68254 other upstream 290169 733555 ~ 734771 (-) True G57740
TU68216 other upstream 396046 839432 ~ 856952 (-) False G57733

Expression Profile