RNA id: TU68213


Basic Information

Item Value
RNA id TU68213
length 2159
lncRNA type read_through
GC content 0.41
exon number 4
gene id G57733
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 300980 ~ 856952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGAAAAGTACTACAATTCTTAAGTCTGGAAAAATAAGACTAACAAAGAATGTGTCACTGAGATCTGTTTCTTCCACTGTATGTACATGCTCCTTTTGACTCTGTTTGACTCTTTTGACCCTTTGGAAAAGCATTGCTTGGCAAAATGATTCTGCCCTTTACATTTGGCACAGACTTTGCCGTAGGCTGGGCACTGCTTTGGTGGGTGTTTTCTGCCACATCTCTTACAGTTAAACAGTTCTTTCTCCTTTTGTTGTTTCACTTTACTCATTCCACATCTCTGCATCTTCTCTGTTACTGCAGCTACAGCTGAACTGTCACTTCCACTCGTCTTTGTGGTTTCATAAAAAGTTTTAACATGCTGAAGAGCAATCTCACTGGCATGACATATCCGCACAGCTTCATTCAAGGACAGGAATAGAAGCCACCACACCACAGCTTGACTTCTGCTTCGTAATCCACACACCCCACTGagagagcgctacCATGGTGGGTGATTATCCTGATAGTGTTTGGGCTGCTGCTTGTTGTTGTGCTGCTTGTGATAATCTGGTACCAGAGGAAACAAGTTCATTGCTGCCAAAGAGATGAACTTGTACAGAGGAGCAGCAGTGGAGCAGGAAGATATCAGAGCTGGAATGGTACCTCAGAAATGACTAACCTACGAGAGAACCAAATGCATGTTGGAGCAGGAGGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGATTTATAACTTCATGCAGCATGATTCTGGAGCAAGGAGAGAGCTAAACTCAGATAGGAAGACGGGAATAAATGATTTCTCCATCCCTTTGTTCTTCACAACACCAAAAGAATACGACCTGACTACAGAATCTGCTGGAATCCTCCCTCATACTGTTTGTCAGTTCTAGACCTGACTActgcaagtcttttttttaatccctttatcTGTTACATATCCTCATCAGATCTTCTTATAGGCTTCTCCTGTCATATATTACCTTTGGAGATGATTTCACTGAGCACCACATCATGTACGAAGCCTGGTTTAGATCTCCACACCTGCTTTAATTTCCTgaaatttacatctagatgtgaaATAGCAAAATATAGCCATCACAGGTTTTACCAGCATCACCTTACCTACCTaactgttttattgtaaatgtaaatgatttatatacTGATGAAGTGACGTCTTAAAGTGTACTAAATACTGGTGCCTTTTACATGTTGAAGAGACACggtactttattttaaatacattttaaaagataaaaagcatgaaataCTTTCACTGGTAGAGactacattatcatttctgacTAATGTGAACTAAGTGGACGTTTTCATGGCAGTCTGTTTATACAGGCTCTTTTTCAGTTAATTTCACTGCAAGATGTTCAGTGCACAtgagaagaagtagaagaataACATACTCTATGTGTAGTCTTTTGAGAGGGTTATCTGTAGCATCATTACTAGAGATTGTGAGGGAGGATCTAAGCACACAGAACAGTGTTAGCAGAGATATGCTAGGTGCTGTGATTAGCGTGCACACAAAGCTATTGATGAACATGCAGCAGTGAATTGAGCCTGCATAGAAGTCTACTTCCGTTCCTCTCGCACTCATCAGTGACGCACAGTCGCACTTTGTTATTGCTCGCTCGCAGGGCTACACTCTGCTCATGATTCAACTAGATATTTGAGATTTTGGGGCCagaattcagacacacacatgttccCACTGCTATGATTAGCTAGATATAAAATaccaaagtgctaatttaagacTTCCTGAAGAAGAAGGTGTTTATGGAGGTGCCAGGACAGAGgagagtcttgatgcaggtcttccttgtaccctgagagatggagagagcagttgagcagtgctagaggatcagagggagcgtggtgcagtgtgaggtgtgataagtgctttgaggtagCTGgatgctggtctgtttttggctttgtaggagagcatcagtgttttaaatctgatgcagcagctacaggaagccagtggagggagcctagcattaattaaattaattaattgacaAGCAGAATGTTTAAACAGACTGGCATGAAAATGGCCATTTCATTAAGAGTCAGAAATGGTAGAGTAGTGTAGCTGTATGTACAATAGACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68324 lncRNA downstream 5626 429960 ~ 435673 (-) True G57799
TU68314 lncRNA downstream 11763 427215 ~ 429536 (-) True G57793
XR_004577972.1 lncRNA downstream 15214 421730 ~ 426085 (-) True LOC117597025
TU68274 lncRNA downstream 19990 336270 ~ 421309 (-) True G57760
TU68215 lncRNA downstream 21431 300980 ~ 419868 (-) False G57733
TU68346 lncRNA upstream 203 544163 ~ 826584 (-) True G57816
TU68269 lncRNA upstream 8139 552099 ~ 595196 (-) True G57755
TU68348 lncRNA upstream 9809 553769 ~ 599202 (-) True G57818
TU68349 lncRNA upstream 10658 554618 ~ 599202 (-) False G57818
TU68351 lncRNA upstream 13182 557142 ~ 587403 (-) False G57820
XM_034303493.1 mRNA downstream 29090 395440 ~ 412209 (-) True LOC117597013
XM_034303492.1 mRNA downstream 35535 395440 ~ 405764 (-) False LOC117597013
XM_034303495.1 mRNA downstream 35546 395440 ~ 405753 (-) False LOC117597013
XM_034303487.1 mRNA downstream 55456 347059 ~ 385843 (-) False LOC117597012
XM_034303485.1 mRNA downstream 58213 347059 ~ 383086 (-) False LOC117597012
XM_034303503.1 mRNA upstream 156089 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 166399 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 166405 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 304113 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 319418 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 142843 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 343182 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 68283 612243 ~ 614243 (-) True G57830
TU68378 other upstream 139528 683488 ~ 746031 (-) True G57838
TU68254 other upstream 189595 733555 ~ 734771 (-) True G57740
TU68216 other upstream 295472 839432 ~ 856952 (-) False G57733
TU68413 other upstream 497817 1041777 ~ 1048841 (-) False G57868

Expression Profile