RNA id: XM_034303492.1


Basic Information

Item Value
RNA id XM_034303492.1
length 2233
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC117597013
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 375243 ~ 451693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTACTCGCTCTGAATCGAAACTGAAAGTGTAAAAGGTGAAGCTTCAGCAGCACGGAGCGGAGTGGATCAAACCGAGTGTTTAACCTTCACACGGTACCTGGTTAATTCCTCACCTGTTCTCACCTGTGCAgtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCATGTCCTGCTTTTATTCATCCTCACGTTCatcacagAACCTGTATCAGCTTGCACACCTGTACAGGTGAAGTTTAATCAGTCTGCTGCTCTGCCCTGTGATTGGAGCTGTTCCGGTGAGGCCAAATGGACTCTGTTCAGTAACCGAGATGTTGTAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTAAAATGTCCCATGATCAGTACCTGAAGGGAAATCTCACCCTCACCATCACTGAAGCTGATGATAGTAAGAGGGGAATATACATGTGTCAGTGTGATGACAGAGAAATTGATGACATGCGTCTCATCATCGAGActATGACATCATCAGTTCAGATAAACCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGCGCGAGTGAAGGTGATCTATAAGGGTGGAGATTCAGCAGATCCACATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTACGCTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAATTCGACTGATGGGGGAGTTTACATCGTCCACGACACGGAGAATAATGAAGATCTTCATATTTACTCAGTATCAGTGAGAGagacagATTGGCACAGGGAACAGGAGAGTGTGGGACCAATTTGGGTGTTTGTCCTGATAGTGGTGCTGCTGGTCCTGGTGGTTATTGCGCTGTATGTGATAATACGGTGCCAGAAGAAACAACTTCATTGCTGCCAAAGAAATGAATTCTCAAACATACAAATGGAGAAATGTATGGAAGTGACTGAGAACTTCCTACAGAAGAGTGGTGGAGCAGGAGGAGAACAGATCTCAAATGGCAACACAGCAATGATCAACTCAAACAAGGGACAAATTAACTGAGAAATCTCCAGCAGTATAAtctctcatttctctttgttactgaattattttctgttttgcatCGTTGTTTCTGCTCTGACTTTCTTCAGAAGTGCTCAGGTTTGTGAACCCTGCAAGTTCATGTTTTTCCCACATGTCTATTGTGATTCCTCTCCCTGTGAGCTGCTCCATGTCAGTCTGAGCTGCTCAGTAACTTTcccactagctgggactgatcagtgtttactgggtgtgtcctcatacacacgtgttcactagctggtGTTGCTGGAGCTGATTAACGTCACTGAGCTTTGTTTTATTACTGTACACCGGAGTGACTCTGTCTTCTCCCCTCAGCTGTGTCTCTGCAATGGCGCTTAACTGCTCCATAACTCAGCTTCACTGCTCGTGTCTGTTTAGattctttaatataaaaattattttgatcACCATTTCAACaccttttaattaattttgtctGTGGTCTGGATAGAAATTATagaatattgtaaatataaatataataaatcctCCTTCTCGATGTAATGCATTTTGATGTGCAAACGAGCTTCCTGTAGTTGTGGAAATGGTCATTAAATGGTAACAGTCTGTGTGGTAACAGTGCCACCTGCAGTACTGGAGCAGTCATACAGCATGGCCAGTATGAAACTGCAGAGAGTGAGCTCATGAAGGTGGTTTTATCTTCACACGGCGCTCATAGATGTTTGTTTCCAtcttatatatatgtatattctactttttgaatattaaatattattttttaaaattcttttaaaaaattgttttccttttcactGCAAATTTTTAGACATAATAGTCAAATTAAAGGgtttaaaaggttttaaatgcAACGCTGTGAATTTCCTACCAAACCTACATATCCTACATGTTGTGTATCGCAGAGTACCTTCAAATAtcgttttttaatatttttgtcatatttcacACCTCTATCATGTGCTCATGTTTGAGTTAGCCGATATCAGCTATTTTCTTTCTaacatttgtttattactttctgCAGTTGATGTGTAACGTAGAATTCCAGATTTGTTTgtataagttaaaaaaaaatacagatgaaATAGATGTTTTCAGAAGAATACAGGAATAAACagatgcagaaaaacacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68266 lncRNA downstream 1029 344571 ~ 394411 (-) True G57752
TU68315 lncRNA downstream 5806 388746 ~ 389634 (-) False G57794
TU68302 lncRNA downstream 34338 360739 ~ 361102 (-) True G57786
TU68240 lncRNA downstream 34707 300980 ~ 360733 (-) False G57733
TU68294 lncRNA downstream 38386 326345 ~ 357054 (-) True G57778
TU68262 lncRNA upstream 2746 408510 ~ 412326 (-) False LOC117597013
XR_004577972.1 lncRNA upstream 15966 421730 ~ 426085 (-) True LOC117597025
TU68314 lncRNA upstream 21451 427215 ~ 429536 (-) True G57793
TU68324 lncRNA upstream 24196 429960 ~ 435673 (-) True G57799
TU68325 lncRNA upstream 34514 440278 ~ 479284 (-) True G57800
XM_034303487.1 mRNA downstream 9597 347059 ~ 385843 (-) False LOC117597012
XM_034303485.1 mRNA downstream 12354 347059 ~ 383086 (-) False LOC117597012
XM_034303486.1 mRNA downstream 12354 347059 ~ 383086 (-) False LOC117597012
XM_034303483.1 mRNA downstream 21412 347059 ~ 374028 (-) False LOC117597012
XM_034303488.1 mRNA downstream 21414 347059 ~ 374026 (-) False LOC117597012
XM_034303503.1 mRNA upstream 294285 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 304595 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 304601 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 442309 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 457614 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 96984 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 297323 95428 ~ 98117 (-) False LOC117596995
TU68328 other upstream 42961 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 206479 612243 ~ 614243 (-) True G57830
TU68378 other upstream 277724 683488 ~ 746031 (-) True G57838
TU68254 other upstream 327791 733555 ~ 734771 (-) True G57740
TU68216 other upstream 433668 839432 ~ 856952 (-) False G57733

Expression Profile