RNA id: XM_034303496.1


Basic Information

Item Value
RNA id XM_034303496.1
length 2204
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC117597013
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 375243 ~ 451693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAGTGAAGTGCGCATGCGTGAATCGAATATGAAAGTGTAAAAGGTGAAGCTTCAGCGGCACGGAGCGGAGTGGAGCAAACTGAGTTTTCAACCTTCACACGtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCATGTCCTGCTTTTATTCATCCTCACGTTCatcacagAACCTGTATCAGCTTGCACACCTGTACAGGTGAAGTTTAATCAGTCTGCTGCTCTGCCCTGTGATTGGAGCTGTTCCGGTGAGGCCAAATGGACTCTGTTCAGTAACCGAGATGTTGTAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTAAAATGTCCCATGATCAGTACCTGAAGGGAAATCTCACCCTCACCATCACTGAAGCTGATGATAGTAAGAGGGGAATATACATGTGTCAGTGTGATGACAGAGAAATTGATGACATGCGTCTCATCATCGAGActATGACATCATCAGTTCAGATAAACCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGCGCGAGTGAAGGTGATCTATAAGGGTGGAGATTCAGCAGATCCACATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTACGCTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAATTCGACTGATGGGGGAGTTTACATCGTCCACGACACGGAGAATAATGAAGATCTTCATATTTACTCAGTATCAGTGAGAGagacagATTGGCACAGGGAACAGGAGAGTGTGGGACCAATTTGGGTGTTTGTCCTGATAGTGGTGCTGCTGGTCCTGGTGGTTATTGCGCTGTATGTGATAATACGGTGCCAGAAGAAACAACTTCATTGCTGCCAAAGAAATGAATTCTCAAACATACAAATGGAGAAATGTATGGAAGTGACTGAGAACTTCCTACAGAAGAGTGGTGGAGCAGGAGGAGAACAGATCTCAAATGGCAACACAGCAATGATCAACTCAAACAAGGGACAAATTAACTGAGAAATCTCCAGCAGTATAAtctctcatttctctttgttactgaattattttctgttttgcatCGTTGTTTCTGCTCTGACTTTCTTCAGAAGTGCTCAGGTTTGTGAACCCTGCAAGTTCATGTTTTTCCCACATGTCTATTGTGATTCCTCTCCCTGTGAGCTGCTCCATGTCAGTCTGAGCTGCTCAGTAACTTTcccactagctgggactgatcagtgtttactgggtgtgtcctcatacacacgtgttcactagctggtGTTGCTGGAGCTGATTAACGTCACTGAGCTTTGTTTTATTACTGTACACCGGAGTGACTCTGTCTTCTCCCCTCAGCTGTGTCTCTGCAATGGCGCTTAACTGCTCCATAACTCAGCTTCACTGCTCGTGTCTGTTTAGattctttaatataaaaattattttgatcACCATTTCAACaccttttaattaattttgtctGTGGTCTGGATAGAAATTATagaatattgtaaatataaatataataaatcctCCTTCTCGATGTAATGCATTTTGATGTGCAAACGAGCTTCCTGTAGTTGTGGAAATGGTCATTAAATGGTAACAGTCTGTGTGGTAACAGTGCCACCTGCAGTACTGGAGCAGTCATACAGCATGGCCAGTATGAAACTGCAGAGAGTGAGCTCATGAAGGTGGTTTTATCTTCACACGGCGCTCATAGATGTTTGTTTCCAtcttatatatatgtatattctactttttgaatattaaatattattttttaaaattcttttaaaaaattgttttccttttcactGCAAATTTTTAGACATAATAGTCAAATTAAAGGgtttaaaaggttttaaatgcAACGCTGTGAATTTCCTACCAAACCTACATATCCTACATGTTGTGTATCGCAGAGTACCTTCAAATAtcgttttttaatatttttgtcatatttcacACCTCTATCATGTGCTCATGTTTGAGTTAGCCGATATCAGCTATTTTCTTTCTaacatttgtttattactttctgCAGTTGATGTGTAACGTAGAATTCCAGATTTGTTTgtataagttaaaaaaaaatacagatgaaATAGATGTTTTCAGAAGAATACAGGAATAAACagatgcagaaaaacacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68266 lncRNA downstream 1029 344571 ~ 394411 (-) True G57752
TU68315 lncRNA downstream 5806 388746 ~ 389634 (-) False G57794
TU68302 lncRNA downstream 34338 360739 ~ 361102 (-) True G57786
TU68240 lncRNA downstream 34707 300980 ~ 360733 (-) False G57733
TU68294 lncRNA downstream 38386 326345 ~ 357054 (-) True G57778
TU68261 lncRNA upstream 4062 452633 ~ 698272 (-) True G57747
TU68333 lncRNA upstream 6271 454842 ~ 501206 (-) True G57805
TU68311 lncRNA upstream 8918 457489 ~ 503881 (-) False G57792
TU68336 lncRNA upstream 22278 470849 ~ 471624 (-) True G57808
TU68239 lncRNA upstream 32349 480920 ~ 514265 (-) False G57733
XM_034303487.1 mRNA downstream 9597 347059 ~ 385843 (-) False LOC117597012
XM_034303485.1 mRNA downstream 12354 347059 ~ 383086 (-) False LOC117597012
XM_034303486.1 mRNA downstream 12354 347059 ~ 383086 (-) False LOC117597012
XM_034303483.1 mRNA downstream 21412 347059 ~ 374028 (-) False LOC117597012
XM_034303488.1 mRNA downstream 21414 347059 ~ 374026 (-) False LOC117597012
XM_034303503.1 mRNA upstream 251478 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 261788 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 261794 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 399502 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 414807 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 96984 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 297323 95428 ~ 98117 (-) False LOC117596995
TU68328 other upstream 154 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 163672 612243 ~ 614243 (-) True G57830
TU68378 other upstream 234917 683488 ~ 746031 (-) True G57838
TU68254 other upstream 284984 733555 ~ 734771 (-) True G57740
TU68216 other upstream 390861 839432 ~ 856952 (-) False G57733

Expression Profile