RNA id: XM_034303484.1


Basic Information

Item Value
RNA id XM_034303484.1
length 2631
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC117597012
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 347059 ~ 497563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAATGCCTCAAGCAGTAGAtgttgcagccagggacccctttaaatataaaatgaatgcaaaGCAGCTCCTCATCACAGATATTGTTTAtgaacattgtactttttaaacaCCCACCCAGGCCACCCCATACACCCACAACCAATTTTGAGACCGCTGACCACGCACTGTAAAGTCCACTTACtgaccaatttattaggaacacctgtacacctgctcattaatTCAGGTGACAGGAACGCTCAAACAACCACTCAAATAATTCACTCAAattactcaaataaccactgtttacaaccacggtgagcagaaaagcatctcagaacacagtTTTAGAATGGGGTTGGTGAGTTTTAGAATTTGGTTGGTCAGTGTATCTCAGAAGAAAAGCATGAGTATCTGTTCTATACCTATAAATTAATCTTAGCTCCCCTTTTCTATCTAAACCATAACATCAGTCCTGCAGTTTACAGAAGCCACAACAACATGCAAATAAGATCATGAGCTACAACACGAAATCAAAGTGTGGCATTACTTTAGTGCAGGATTACTCTCTAAATGTTGAAATACTGACCTTCCCCTTTGTGACAAAagcttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatatagGGCTGTGCAGTATGACATAATAATGTGATAAATGATGTGACTATATACTTTTCTATGATATATTGCGGATatcatcagtatttttataacaattaaaaactCATGGAGAATGGAAACAACAGTGGTAAATTTGTActgaagctttaaaactgtaaaatggtacaaattttgtttatttatttattttttgtctccGTATTTTCAGTGTCATTAATTTTGTAGGACACTGAATAAAAGTATGATTAAACTCAGTTTctcacagtttttaaaattaaacacagctgTTTTACTGGATGCCTATATTTCATAATGCACATTGTTTATCATGTATCACTGGACCAACATTTCTAAAGGGTGGGAATATTTATGCACCACaaggggaaaaatgtgttaGCTCGATTTGTAATTCATGTAGTTTGTGTCTagttcaataaaatattaacagcgGAGAGGAATAAGCGCTAAAACTGACTGagaaaaaacaactttaaaaaacCTGTAAAAGACTGATGCAGGCTGTTACAGATCACTAGCTGTGGGAGTGAAGTGCGCATGCGTGAGATTTACTCGCTCTGAATCGAAACTGAAAGTGTAAAAGGTGAAGCTTCAGTGGCACGGAGCGGAGTGGATCAAACCGAGTGTTTAACCTTCACACGGTACCTGGTTAATTCCTCACCTGTTCTCACCTGTGCAgtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCAGGTCCTGCTTTTATTCATCCTCACGTTCatcacagTACCTGTATCAGCTGTCCCTACTGTACAGGTGAAGTTTAATCAGGCTGCTGCTCTGCCCTGTGAATGGAAATGTTCTCGTGAGGCCAAATGGACTCTGTTCAGTGACCGAGATGATGCAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTAAAATGTCCCATGATCAGTACCTGAAGGGAGATCTCACCCTCACCATCACTGCAGCTGATTACAGTAAGAGGAACACGTACACGTGTGAGTGTGATGGCACAGACATTAATGATCTGCGTCTCAGCATCGAGAcCATGATATCATCAGTTCAGATAAACCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGAAGGTGATCTATAAGGGTGGAGATTCAGCAGATCCACATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTACGCTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATGGGGGAGTTTACATCGTCCGGGACACGGAGAATAATGAAGATCTTCATACTTACTCAGTATCAGTGACAGTATCAGTGAGAGagagagcgctACCATGGTGGGTGATTATCCTGATAGTGTTTGGGCTGCTGCTTGTTGTTGTGCTGCTTGTGATAATCTGGTACCAGAGGAAACAAGTTCATTGCTGCCAAAGAGATGAACTTGTACAGAGGAGCAGCAGTGGAGCAGGAAGACATCAGAGCTGGAATGGTACCTCAGCAACGACTAACCTACGAGAGAACCAAATgatgatggagcaggaggagaacCGAATGATGTTGGAGCAGGAGGAGAACCGAATGATGTTGGAGCAAGAGGAGAACCGAATGATGCTGGAGCAGGGGGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGATTTATAACTTCATACAGCATGTTtggattattttctgttttgcatCGTTGTTTCTGCTCTGACTTTCTCCAGAAGTGTTCAGGTTTGTGAACCTTGAAAGCTCATGTTTTTCCCACCTGTCTGTTGTGATTCCTCTCCCTGTGAGCTGCTCCATGTCAGTCTGAGCTGCTCAGTAACTTTcccactagctgggactgatcagtgtttactgggtgtgtcctcacacacacgtgttcactagctgggactgatcagtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68164 lncRNA downstream 64076 279982 ~ 282983 (-) False eif2b5
TU68191 lncRNA downstream 84723 222221 ~ 262336 (-) False G57727
TU68179 lncRNA downstream 90383 213341 ~ 256676 (-) True G57723
XR_004577979.1 lncRNA upstream 1405 498209 ~ 510003 (-) True LOC117597030
TU68340 lncRNA upstream 4741 501545 ~ 708236 (-) False G57811
TU68259 lncRNA upstream 10290 507094 ~ 846016 (-) True G57745
TU68217 lncRNA upstream 25182 521986 ~ 699337 (-) False G57733
TU68230 lncRNA upstream 25182 521986 ~ 538098 (-) False G57733
XM_034303501.1 mRNA downstream 25370 303683 ~ 321689 (-) True LOC117597016
XM_034303516.1 mRNA downstream 47042 280534 ~ 300017 (-) True eif2b5
XM_034303964.1 mRNA downstream 74439 262446 ~ 272620 (-) True LOC113525282
XM_026911758.2 mRNA downstream 80772 262446 ~ 266287 (-) False LOC113525282
XM_026911766.2 mRNA downstream 166784 177871 ~ 180275 (-) True LOC113525290
XM_034303503.1 mRNA upstream 203245 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 213555 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 213561 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 351269 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 366574 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 48603 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 248942 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 115439 612243 ~ 614243 (-) True G57830
TU68378 other upstream 186684 683488 ~ 746031 (-) True G57838
TU68254 other upstream 236751 733555 ~ 734771 (-) True G57740
TU68216 other upstream 342628 839432 ~ 856952 (-) False G57733
TU68413 other upstream 544973 1041777 ~ 1048841 (-) False G57868

Expression Profile