RNA id: XM_034303490.1


Basic Information

Item Value
RNA id XM_034303490.1
length 1715
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC117597012
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 347059 ~ 497563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTAAAAGCCTTTCAGGAAGAACGGCTGGCTTAACCGCAGTCACGTGACGGACTTCACTTCCGGTTTTATTGCTGCTTTTTCTTCCGaggagaatctggaggtactatacttgcgtttgtgttgccagggattccctcgttgcgttgttgtttggaaggagtttccggcgatgttgattggtcggcggtctggttggcgttatgtagcgtctcgaaagaccaatgaggaagataaacagagtgaggcacgaacccggcggagtctcGTAGGTGGGTTGCTAAACTTTGAAGAACCCTAACCCTGGTTCACAGCGGTGAgaaggcgagagttggaggctttgcaggaaccagtctggatgcggagtctcggagcaagcgtgatctcctcgTGATCTCCTCGTGATGACAAGGGtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCATGTCCTGCTTTTATTCATCCTCACGTTCatcacagTACCTGTATCAGCTGTCACTACTGTACAGGTGAAGTTTAATCAGGCTGCTGCTCTGCCCTGTGAATGGAAATGTTCTCGTGAAGCCAAATGGACTCTGTTCAGTAACCGAGATGATGCAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTGAAATGTCCCATGATCAGTACCTGAAGGGAGATCTCACCCTCACCATCACTGCAGCTGATTACAGTATGAGGGGTTTATACATATGTGAGTGTGGTGACAGAGACATTAATGATGTGCGTCTCAGCATCGAGAcCATGATATCATCAGTTCAGATAAACCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGAAGGTGATCTATAAGGGTGGAGATTCAGCAGATCCACATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTACGCTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATGGGGGAGTTTACATCGTCCGGGACACGGAGAATAATGAAGATCTTCATACTTACTCAGTATCAGTGACAGTATCAGTGAGAGagagagcgctACCATGGTGGGTGATTATCCTGATAGTGTTTGGGCTGCTGCTTGTTGTTGTGCTGCTTGTGATAATCTGGTACCAGAGGAAACAAGTTCATTGCTGCCAAAGAGATGAACTTGTACAGAGGAGCAGCAGTGGAGCAGGAAGACATCAGAGCTGGAATGGTACCTCAGCAACGACTAACCTACGAGAGAACCAAATgatgatggagcaggaggagaacCGAATGATGTTGGAGCAGGAGGAGAACCGAATGATGTTGGAGCAAGAGGAGAACCGAATGATGCTGGAGCAGGGGGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGATTTATAACTTCATACAGCATGTTtggattattttctgttttgcatCGTTGTTTCTGCTCTGACTTTCTCCAGAAGTGTTCAGGTTTGTGAACCTTGAAAGCTCATGTTTTTCCCACCTGTCTGTTGTGATTCCTCTCCCTGTGAGCTGCTCCATGTCAGTCTGAGCTGCTCAGTAACTTTcccactagctgggactgatcagtgtttactgggtgtgtcctcacacacacgtgttcactagctgggactgatcagtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68164 lncRNA downstream 64076 279982 ~ 282983 (-) False eif2b5
TU68191 lncRNA downstream 84723 222221 ~ 262336 (-) False G57727
TU68179 lncRNA downstream 90383 213341 ~ 256676 (-) True G57723
TU68305 lncRNA upstream 994 374455 ~ 497101 (-) True G57788
TU68306 lncRNA upstream 1782 375243 ~ 451665 (-) False LOC117597013
TU68267 lncRNA upstream 3887 377348 ~ 412572 (-) False LOC117597012
TU68310 lncRNA upstream 7604 381065 ~ 457978 (-) True G57792
TU68315 lncRNA upstream 15285 388746 ~ 389634 (-) False G57794
XM_034303501.1 mRNA downstream 25370 303683 ~ 321689 (-) True LOC117597016
XM_034303516.1 mRNA downstream 47042 280534 ~ 300017 (-) True eif2b5
XM_034303964.1 mRNA downstream 74439 262446 ~ 272620 (-) True LOC113525282
XM_026911758.2 mRNA downstream 80772 262446 ~ 266287 (-) False LOC113525282
XM_026911766.2 mRNA downstream 166784 177871 ~ 180275 (-) True LOC113525290
XM_034303497.1 mRNA upstream 13850 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA upstream 21979 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA upstream 21979 395440 ~ 448571 (-) False LOC117597013
XM_034303494.1 mRNA upstream 21979 395440 ~ 448551 (-) False LOC117597013
XM_034303493.1 mRNA upstream 21979 395440 ~ 412209 (-) True LOC117597013
TU68285 other downstream 48603 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 248942 95428 ~ 98117 (-) False LOC117596995
TU68328 other upstream 75264 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 238782 612243 ~ 614243 (-) True G57830
TU68378 other upstream 310027 683488 ~ 746031 (-) True G57838
TU68254 other upstream 360094 733555 ~ 734771 (-) True G57740
TU68216 other upstream 465971 839432 ~ 856952 (-) False G57733

Expression Profile