RNA id: TU68303


Basic Information

Item Value
RNA id TU68303
length 402
lncRNA type read_through
GC content 0.36
exon number 2
gene id G57787
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 364792 ~ 827430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAATATTTCTGAGTTATTTAAGCTTAATTTTGCTCCACATTTAGTCTGAACAAAGATAGCTGTTGAAAAATAGTCCAGGCTTCGTATCCCCTTGGCTGgaaagtatatataaatattaaaaaatcttatgttgtttatttaattaagacAATAGCATCTTTTCTTTGGAATAAGAAACTCCCTAGaatttgcttgtgttttttaCGAAATCCCAAGGAACTAGGGAGGATGGCTCTTCCACATTTCCAACTATATTACTGGGCCTGCAATTTGAGAGCTTTAGCATATTGGCAGGATTCACATAACTCTAATCATTTACCGGATTGGGTCCATATTGAATCCTCAGCTTGCCTTCCTTTTTCATTTCCAGCCCTTTTATTCTCACCCTTACCACTCGGTCT

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006952 defense response biological_process
GO:0006955 immune response biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68302 lncRNA downstream 3690 360739 ~ 361102 (-) True G57786
TU68240 lncRNA downstream 4059 300980 ~ 360733 (-) False G57733
TU68294 lncRNA downstream 7738 326345 ~ 357054 (-) True G57778
TU68292 lncRNA downstream 12107 317492 ~ 352685 (-) True G57776
TU68164 lncRNA downstream 81809 279982 ~ 282983 (-) False eif2b5
TU68256 lncRNA upstream 30317 857747 ~ 861437 (-) True G57742
TU68404 lncRNA upstream 82087 909517 ~ 910029 (-) True G57861
TU68417 lncRNA upstream 158481 985911 ~ 1044147 (-) True G57868
TU68271 lncRNA upstream 182795 1010225 ~ 1011047 (-) False LOC117597039
TU68426 lncRNA upstream 185484 1012914 ~ 1013189 (-) True G57877
XM_034303501.1 mRNA downstream 43103 303683 ~ 321689 (-) True LOC117597016
XM_034303516.1 mRNA downstream 64775 280534 ~ 300017 (-) True eif2b5
XM_034303964.1 mRNA downstream 92172 262446 ~ 272620 (-) True LOC113525282
XM_026911758.2 mRNA downstream 98505 262446 ~ 266287 (-) False LOC113525282
XM_026911766.2 mRNA downstream 184517 177871 ~ 180275 (-) True LOC113525290
XM_034303498.1 mRNA upstream 20643 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 35948 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 35948 863378 ~ 886350 (-) False dis3l2
XM_034303473.1 mRNA upstream 35948 863378 ~ 886251 (-) True dis3l2
XM_034303352.1 mRNA upstream 97604 925034 ~ 933915 (-) True LOC113524111
TU68285 other downstream 66336 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 266675 95428 ~ 98117 (-) False LOC117596995
TU68216 other upstream 12002 839432 ~ 856952 (-) False G57733
TU68413 other upstream 214347 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 864896 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1172548 1999978 ~ 2000050 (-) True trnav-cac_1
TU69291 other upstream 1243594 2071024 ~ 2083929 (-) False G58534

Expression Profile