RNA id: TU68324


Basic Information

Item Value
RNA id TU68324
length 248
lncRNA type read_through
GC content 0.41
exon number 2
gene id G57799
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 429960 ~ 435673 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taattaaataaataacaaataataagccataaagaaagagaatatttatatggaacaagaagtgatgaagaagtgatattaatatctgaaAGGAATAAACTGTAAGACTGGCAGCTGAAGTCACTGGAGTCTGAACCACACAGATCattacacatcaggagtaagggtaccgacgcgcaccacgcaggactatacaggagtaacggtaccgacgcgcaccacgcaggactatacgggagtaacggtac

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68314 lncRNA downstream 424 427215 ~ 429536 (-) True G57793
XR_004577972.1 lncRNA downstream 3875 421730 ~ 426085 (-) True LOC117597025
TU68274 lncRNA downstream 8651 336270 ~ 421309 (-) True G57760
TU68215 lncRNA downstream 10092 300980 ~ 419868 (-) False G57733
TU68227 lncRNA downstream 10092 300980 ~ 419868 (-) False G57733
TU68325 lncRNA upstream 4605 440278 ~ 479284 (-) True G57800
TU68203 lncRNA upstream 5626 441299 ~ 711807 (-) False G57733
TU68204 lncRNA upstream 5626 441299 ~ 443386 (-) False G57733
TU68213 lncRNA upstream 5626 441299 ~ 543960 (-) False G57733
XR_004577977.1 lncRNA upstream 6269 441942 ~ 443429 (-) False LOC117597028
XM_034303493.1 mRNA downstream 17751 395440 ~ 412209 (-) True LOC117597013
XM_034303492.1 mRNA downstream 24196 395440 ~ 405764 (-) False LOC117597013
XM_034303495.1 mRNA downstream 24207 395440 ~ 405753 (-) False LOC117597013
XM_034303487.1 mRNA downstream 44117 347059 ~ 385843 (-) False LOC117597012
XM_034303485.1 mRNA downstream 46874 347059 ~ 383086 (-) False LOC117597012
XM_034303503.1 mRNA upstream 264376 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 274686 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 274692 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 412400 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 427705 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 131504 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 331843 95428 ~ 98117 (-) False LOC117596995
TU68328 other upstream 13052 448725 ~ 496852 (-) False LOC117597012
TU68368 other upstream 176570 612243 ~ 614243 (-) True G57830
TU68378 other upstream 247815 683488 ~ 746031 (-) True G57838
TU68254 other upstream 297882 733555 ~ 734771 (-) True G57740
TU68216 other upstream 403759 839432 ~ 856952 (-) False G57733

Expression Profile