RNA id: TU68325


Basic Information

Item Value
RNA id TU68325
length 305
lncRNA type read_through
GC content 0.42
exon number 2
gene id G57800
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 440278 ~ 479284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGATGTGCTAACTGAGCTTATCTGAGGTAAACTCTGAGGTAACTGAAATCTGAGATGTGCTATCTGAGCTAATCTGAGGTAAACTCTGAGGTAACTGAAATCTGAGATGTGCTAACTGAGCTAATCTGAGGTAAACTGAGGTAACTGAAATCTGAGACGTGCTAACTGAGCTAATCTGAGGTAAACTCTGTGATAACTGAGCTAATCTCAGtcaagaggaacctctgtcaaacaTACTGATCTAGACcgttggccaagaccagatggctcacccaacacgatggtaaaactgataactacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68324 lncRNA downstream 4605 429960 ~ 435673 (-) True G57799
TU68314 lncRNA downstream 10742 427215 ~ 429536 (-) True G57793
XR_004577972.1 lncRNA downstream 14193 421730 ~ 426085 (-) True LOC117597025
TU68274 lncRNA downstream 18969 336270 ~ 421309 (-) True G57760
TU68215 lncRNA downstream 20410 300980 ~ 419868 (-) False G57733
TU68239 lncRNA upstream 1636 480920 ~ 514265 (-) False G57733
XR_004577966.1 lncRNA upstream 1991 481275 ~ 482075 (-) True LOC117597021
TU68338 lncRNA upstream 13368 492652 ~ 518985 (-) True G57810
XR_004577979.1 lncRNA upstream 18925 498209 ~ 510003 (-) True LOC117597030
TU68340 lncRNA upstream 22261 501545 ~ 708236 (-) False G57811
XM_034303493.1 mRNA downstream 28069 395440 ~ 412209 (-) True LOC117597013
XM_034303492.1 mRNA downstream 34514 395440 ~ 405764 (-) False LOC117597013
XM_034303495.1 mRNA downstream 34525 395440 ~ 405753 (-) False LOC117597013
XM_034303487.1 mRNA downstream 54435 347059 ~ 385843 (-) False LOC117597012
XM_034303485.1 mRNA downstream 57192 347059 ~ 383086 (-) False LOC117597012
XM_034303503.1 mRNA upstream 220765 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 231075 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 231081 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 368789 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 384094 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 141822 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 342161 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 132959 612243 ~ 614243 (-) True G57830
TU68378 other upstream 204204 683488 ~ 746031 (-) True G57838
TU68254 other upstream 254271 733555 ~ 734771 (-) True G57740
TU68216 other upstream 360148 839432 ~ 856952 (-) False G57733
TU68413 other upstream 562493 1041777 ~ 1048841 (-) False G57868

Expression Profile