RNA id: TU68338


Basic Information

Item Value
RNA id TU68338
length 1132
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G57810
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 492652 ~ 518985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTTTACTGGCAGTATGTGAGGAATCATTTCTTGTAGACCGTCTTccacatacattttatccagcAGCAGTTTCAGTGCTACTTAAGAAAGGGAAAGATCTCCTTAACTGTGGATCGTTTTGGCCTGTGTCTTTGCTTAATGTGGACTGTAAAATATTGGCAAAAGTTTTAACCCGAAGATTGGAGAATGTTCTACCTTCCATCATAACACCGGACCAGACCGGATTCATAAAAAAtcgattttctttttttaatattcacagagtatttgatattatttactCCCTTTATATAAATAAGCTTATACCAGAAATTATAATATCTCTAGATGCTGAAAAAGCTTTTGATAGAGAGAAGtggatcttttcagctgtttaaAGAAATTCGGTTTGGGCCCAAAGTTCTTATCATGGGTAAAATTTCTGTATGCTTTTCCCTCCTCATCTGTCATCACTAATAATATTAGTTCACAATTTCTTCCATTACACAGGGGAACTAGACAGGGGAGGCCCCATGTGTCCCCACTTTTCACAGTAGCGATTGAACCTTTAGCTGTTTTGCTGAGATCAACATCAGTTATTCAGGGAATTATTAGAGGGGCAGAGAGCGTAAATTATCATTATACGCAGATGACCTGCTCCTGTATATCTCAGATCCACATAAttctcttcctcatgttgtgGCTGTATTTGAGCGTTTCAGCACTATGTCAGGATATAATGTCAATCTTTCCAAGAGTGAGCTATTTCCTATAAATCAAGCTGCAAAACTATCTTCCTTTTCTGCTTATCCATTTAAATTAGCCCCAGACAGTGTCACATATCTTGGTGTGGTTGTATCAAGAAATACTTCTGAGTTATTTAAACTTAATTTTGCTTCACATTTAGTCTGAACAAAGATAGCTGTTGAAAAATAGTCCAGGCTGTAATTAAGATGAACGCTCTCCCTAAATTATAACTTTGATcgtagcttattattattattattagtagtagtagttctCAGTTGATGAGGTTACAAAGTTTTATGAAGTAGATagctacaaataaatattaatcaatattaGTAATTACTAGCCCCTCACTTAGCcgtcacagctccagtgttaggtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577966.1 lncRNA downstream 10577 481275 ~ 482075 (-) True LOC117597021
TU68325 lncRNA downstream 13368 440278 ~ 479284 (-) True G57800
TU68316 lncRNA downstream 18394 389331 ~ 474258 (-) False G57794
TU68336 lncRNA downstream 21028 470849 ~ 471624 (-) True G57808
TU68310 lncRNA downstream 34674 381065 ~ 457978 (-) True G57792
TU68217 lncRNA upstream 3001 521986 ~ 699337 (-) False G57733
TU68230 lncRNA upstream 3001 521986 ~ 538098 (-) False G57733
XR_004577965.1 lncRNA upstream 16880 535865 ~ 537721 (-) True LOC117597020
TU68346 lncRNA upstream 25178 544163 ~ 826584 (-) True G57816
TU68269 lncRNA upstream 33114 552099 ~ 595196 (-) True G57755
XM_034303497.1 mRNA downstream 40959 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 40961 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 44081 395440 ~ 448571 (-) False LOC117597013
XM_034303494.1 mRNA downstream 44101 395440 ~ 448551 (-) False LOC117597013
XM_034303493.1 mRNA downstream 80443 395440 ~ 412209 (-) True LOC117597013
XM_034303503.1 mRNA upstream 181064 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 191374 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 191380 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 329088 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 344393 863378 ~ 886395 (-) False dis3l2
TU68285 other downstream 194196 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 394535 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 93258 612243 ~ 614243 (-) True G57830
TU68378 other upstream 164503 683488 ~ 746031 (-) True G57838
TU68254 other upstream 214570 733555 ~ 734771 (-) True G57740
TU68216 other upstream 320447 839432 ~ 856952 (-) False G57733
TU68413 other upstream 522792 1041777 ~ 1048841 (-) False G57868

Expression Profile